RNA id: XM_043219449.1


Basic Information

Item Value
RNA id XM_043219449.1
length 2575
RNA type mRNA
GC content 0.46
exon number 10
gene id samd7
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17253232 ~ 17259748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTGttgcatgcacacaaaaaaacacttgaaagacACATGCACATCTTGCTTGATTTCAACTGACACTGGAAAAGGAAGCTGGGCATTTAGGTGTCTTACCCTCGGTCTTAAAGTGCTAACAGAGGATTACTGAGGTAAATGTTGAAAGAGGTTTAGCCGCTGTGCTTAGGCAGTGCTCTTAATTACATTTCAGCAGAGTGTCCCGCGTGCAGTTGGACGAGAGATCATAGTGATGTCAGGTAAGGGGGGGCTTAAGCAGGCAGATAAAGCCAAGCTAATAGAGATAACATGAATCTGTAATTAAAGGTCTTTTTTAGTTAAGACCAGGAGCTGGCACTTGTTGGCCGAGGCTTTTGCGGCAGGACTGGAGACCTCAGAGCGCCGAGAGTTGTGGACTTTCTTGTTGCTGCTTCAGGTCTCATGCTCATTTCGGAATAATTTTGCTTGTTTGGAATGAATGCGTTAATATTTTCATCCTGACTGAGAGTTTGGACAGATTCCCACTTCTCTGGCAGACATTCAGAGTTTCACACTAAAAAGGAGTGACATTACGGAAATATCTTACACCTGAGTGAGTGAAGATAAAGCACAGGAGGAGTGAACAGTCAGAAAAGAGGCACTGTCATGACCCCTCGTGAACAGCTAAGGAAGATATCAGCGCTTGGAGAGCAAGGCGCTTTAGATGAGAAACACTGGTACCGACTAGTCAATGGAATGTCTGCTGGAGCAGAGCTACGGCAAAGGCAGGAGCTCATGATGAGGAACCAGATGGCCATGGCTCCACAGATCTTGGCTCAGGGGCAGCAGAGACTGCAGGGTGTGCCTGCACAGTTTGATCCCCGCTTCATGGAGAGGGAACTGGTGCCACCCACTGAAATGGTATCAGCTGATGCTAGACAAATCCACATGGGTGCCCACCTGGGCCCACCTCTACCCCCAAACTCAAATGTTATTCCAGGCAGAGGATTCCCTGGCACAGGTTACGGATTCCTTCCAACTGAATCCATGGAGACGGTTGCTAGACGACAAGAGTTAATTCACAAACAGAACATAGCCAGgaTGGAGATGAATGCTATCCTGCACCAAAAAGAATTGGAGAATGCCCACCAAAAGGGCCTTATTGGGATGGAGAATCCCATGATGTACCAGGGCATTCAACCCAATCCAATGGCCTTCAGGGGACGCCAGCGACTCCCAGATGGACATGATGTGTTCGTCCATCGCACCGCCCTTGAAGACCTGCACGCTAACAGTCTCCTCATGTCGAGCCCTTACCCACCGATCAGCACACTGCAAAGGGAGCGAGGACGCAGGACAGGCAGAAGGACTGCCAATCATAAGAGCTCAGACAGCAGCATCACTCTCCCCaaaggccaatcagaagagaagAACATCGAGCAGAGTCCAGGAGCTGCCTCTGGGGAAGAGAAGGAAGTTGAAGGGAAAGGCGAAATGAGCAATGATGCTACCACCAGCAAACCACACCAAACCAAAGTAGAAACAGAGCTGTCTTCTGGATGTAGTAGGAAAGGTTTTAAGGAAGGAGAGCCAGGGATTCGCAAGACATGTATTAGTGGACAGGAGGGATGTGCAGAAGTCACCAACTGCAACGCTAGCACCAGTGACAAAGACATATCCAACCCTTGCTCGGCTTTCCAAGAAAAGTTTCTGTATCCGTCTGCTCCTGGCCCACTCACAGGGATGCCCTACATGCTACCTGTGCCAGGAAATGGACTCGTACCAATAGGACATCCTAATATGTTTCTTAATGGAGAAGAGATGACTTCATTAGAAGACATACGCAAGTGGTCGGTTGATGACGTCTACAACTTCATCAGTGAAATACCAAGCTGCGCTGAATACGCACAGACATTTAAAGACCACATGATTGATGGAGAGACATTACCTCTTCTTACAGAGGACCACCTCCTGGATACACTTGGTCTAAAGCTCGGGCCAGCACTTAAGATACGATCACAGTTGTCCCGACGGCTGGGTAACATGTTCTACAACATGATGAACATGCCTCTGCCCGTCTCCGGTCTGCAGCCTCCGCCTGAGAAAAGCGGGGACAGATCATCAGACATCAGCTCTCCCCTCAACTGCAACAGTGTGGAGCTGCTCAGCAGTCCCAGAGACACAGAGGCTCTTAAATCTACAGAGCCTGTAAGTGAAGCTGATAATCCTTCACCAAGCCAGATGAGTGAGACCACCTGAGAGACCATGCAGAACTGCTGGACTTCTTTTACCTCAAAATTCTTCACTGTTGAGATGCCTAATGCATAAGTTAGCCAGGCACTGACATTTCTGTACTGAATATAatgatcatatattttttaatattaatcataaatatattatgatcTGTGTTATGCAATAGGTTCAGAATGTGGCCTCCAACAGTTAGATTTTCGAATGcagaatatttctgtatatgtatattttgtaataagttAGCAAATCAATTACAAACAATTTTTGTCCTTACTGCAgccttttttattgtaaaattgtattttggtTTTTACTATAAACTTGAATTATTCTATATTGTCATGTGTTGTTTGCtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19172 lncRNA upstream 46751 17204414 ~ 17206481 (+) True G12985
TU19173 lncRNA upstream 48009 17204414 ~ 17205223 (+) False G12985
TU19169 lncRNA upstream 62625 17187117 ~ 17190607 (+) True G12982
TU19158 lncRNA upstream 90260 17161176 ~ 17162972 (+) True G12972
TU18944 lncRNA upstream 118344 17133077 ~ 17134888 (+) True G12823
TU19164 lncRNA downstream 12906 17272654 ~ 17273162 (+) True G12977
TU19186 lncRNA downstream 21512 17281260 ~ 17285830 (+) True G12995
TU19206 lncRNA downstream 126314 17386062 ~ 17387548 (+) True G13007
TU19304 lncRNA downstream 219976 17479724 ~ 17480102 (+) True G13075
TU19305 lncRNA downstream 220475 17480223 ~ 17480494 (+) True G13076
XM_043218419.1 mRNA upstream 3990 17247935 ~ 17249242 (+) True apoda.2
XM_043254492.1 mRNA upstream 8799 17234058 ~ 17244433 (+) True copa
XM_043254494.1 mRNA upstream 19369 17229880 ~ 17233863 (+) True pex19
XM_043218601.1 mRNA upstream 34034 17211876 ~ 17219198 (+) True slc1a8b
XM_043253285.1 mRNA upstream 106167 17145373 ~ 17147065 (+) True gadd45bb
XM_043217977.1 mRNA downstream 1063 17260811 ~ 17268079 (+) True sec62
XM_043256086.1 mRNA downstream 17102 17276850 ~ 17280393 (+) True gpr160
XM_043253020.1 mRNA downstream 73948 17333696 ~ 17343059 (+) False phc3
XM_043253046.1 mRNA downstream 73948 17333696 ~ 17343059 (+) False phc3
XM_043253074.1 mRNA downstream 73948 17333696 ~ 17343059 (+) False phc3
TU18915 other upstream 215935 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 984435 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2470255 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2470528 14776322 ~ 14782704 (+) False ackr4a
TU17573 other upstream 3073617 14175364 ~ 14179615 (+) False G11854
XR_006252905.1 other downstream 102497 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 307093 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 347504 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 519591 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 524431 17784179 ~ 17816764 (+) True G13137

Expression Profile