RNA id: XM_043219721.1


Basic Information

Item Value
RNA id XM_043219721.1
length 1793
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC122324938
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24079156 ~ 24081504 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTGATAATTTCTTATAATACAGCAGTGAGGATCTGTGTGAGCAGTCATGGACGGGGGTCTGTTTGTGCTGCTTCTGCTGTCAGGACTCTTCTGGAGCAGTTCTGCTCTTTCTCGTCCGTACttctatataaatacagcaaTGTCGTGGCCAGATGCTCAGAGTTACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACAACATGGATGACGTGAACAGGCTGGTGAATATAACAGATGCTGGATACAGCGGATCAGTGTGGATTGGACTGATGAAGGGGACACAGAAACAGTGGAGTTGGTCTAATGGAGAAAACACAACTTCTCAGTACTATAACTGGGCTTCAGGACAGCCAGATGCAGATGGAgattgtgttattattaattctgGATTTTGGCATGATATGTCATGTAGTAATAACCGATATTTTGTGTGCTATAGAAGTAATGGATACGTCTTTGTACAAAGTGCTAAAAACTGGACAGATGCTCGGAGCCACTGCAGACAGTATTATACCGATCTGGCCACCATCCACAGCTCTGTGGAGAATAAGCAGATAACTACGCAAGTTTTAACCGGATTGTCCTTCTGGCTTGGTCTGTTTCTGGACTCTTGGGGATGGTCTGATCAGTGGGATCTGAGTTTCAGACACTGGGCAGCAGGTCAACCTTCCCAGGCTTCAGGATCTAACTGTGTTGGCATGACAAGAACCGAGTCTGGCAGATGGTCTCAGTACAGCTGTGATGTACAGCAGCCATTTATCTGCTATGGAGATGACTCGAAAAAACAAATTGTGAGATTGAAAGTCACCTGTAATGGAAATTGTGCATTGAATGATCCTTCAGTACAGACAGCTATCCTGAATGAGATAAGTGAAAAGCTGAAGAACATGATGTTGGAGAGTGAAAGCAAAATAAGATGGAGAAAGGGGAGCAATGGAGAGGTGTTTCATCAGGAGAACAACCATATGGTGAATTtagataataaatgtattaggaacgtgtaatgtatttttaaaaaaaatgaaaacactgctttaaaagtTAACGTTACTATGTTGTTTTGAAAAGCTGgaaaatagtagtagtagtgcaatacaatattaacaaaattgATGAATGTAGTCtaataatagttataaatatttgcattattacaaGATTACTTTTGTTTCAACAcattcaattttattaatttcctaCGAACGCAATCGACGTGGTTTCGAATCTGCTTTCTGACAgcatttttttctcccttttgaaattttaaatctcatcataaaagcatttattgtcAATAATAGTcaaggaaataatcaaaaagttcaaaataaagtgttgggtGTTGGCATCTGTTTAATAAGTATcagttagggtttgggttatcATCACTTCTGTAATTTTCTCAGCATCTATTGCACGGATTTGTGCAAGCTTGAATAAGGTGGCCTGTTTCACCTAAATACttgcagtaaaaatgtatagaatTAAACTTACGGTGAATGTTTAAAGACAGATCTTTACGCTCATGGCTCCAACCAGTTCCAAGAATTCCAGTCAGTTCCGTCCGGAACACCGTCTTACTgcttattagtttttttgtgatttatccCTTGTCGCCTTGGACGCCTTGTTtgcacactgtgtgtgtgtgtgtgtgtgtttaatttttgtctttctctttttttccttttgaggATCAAATCTTTGTTAATTTTGCGGTCACTGGGTGCAAGACATCTACCTGGTTTCTGCTGTACAGTTAGGAAATCGGGAATCGTCTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22264 lncRNA upstream 16963 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 30814 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 55548 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 84035 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 84645 23993475 ~ 23994511 (+) True LOC122328496
TU22285 lncRNA downstream 59736 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 64630 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 93781 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 105120 24186624 ~ 24250684 (+) True G15041
TU22317 lncRNA downstream 139482 24220986 ~ 24231256 (+) False LOC122325249
XM_043222800.1 mRNA upstream 5952 24071209 ~ 24073204 (+) True LOC122327432
XM_043222786.1 mRNA upstream 16954 24059412 ~ 24062202 (+) True LOC122327425
XM_043222775.1 mRNA upstream 30691 24045685 ~ 24048465 (+) True LOC122327416
XM_043218841.1 mRNA upstream 46953 24029004 ~ 24032203 (+) True LOC122324443
XM_043224190.1 mRNA upstream 82006 23995183 ~ 23997150 (+) True LOC122328481
XM_043222812.1 mRNA downstream 6467 24087971 ~ 24096897 (+) True LOC122327442
XM_043220920.1 mRNA downstream 28159 24109663 ~ 24111683 (+) True LOC122326195
XM_043222826.1 mRNA downstream 31273 24112777 ~ 24115107 (+) True LOC122327448
XM_043222839.1 mRNA downstream 35238 24116742 ~ 24117634 (+) True LOC122327453
XM_043257880.1 mRNA downstream 160368 24241872 ~ 24249991 (+) True abhd17aa
XR_006247041.1 other upstream 140213 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 342034 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 531182 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1383826 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2150337 21928747 ~ 21928819 (+) True trnam-cau_1
TU22269 other downstream 2334 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 411934 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 959925 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 960479 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 961033 25042537 ~ 25042619 (+) True trnal-uaa_2

Expression Profile