RNA id: XM_043220303.1


Basic Information

Item Value
RNA id XM_043220303.1
length 4126
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC122325295
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23018357 ~ 23025395 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagaggcgcgTGCGTctgcacacagacagacaaagacGGCGGAACGAACGGGAGAAAGCGCTGTAACACCTCTCTATCGTTCCACGCGTGAAAACGGCCAGAAAAGCAATGAGCAGACCGCGCGAGTGAGCGGCGCCGAGGCGGGACGCGTGATCCGAGCGCGCGCCGGGGGTCGATTTTGACCGCGAATGCTTTTAAAACGAGCCTCTTTCTCCAACGCCCCCCAACGATTAGCAGCTCCGCTAGCGGCTAGCCATCAGCACCAGCTCCCTCATCCTCCGCCAAACACCCGACGCGAGCGGGACGGCAGCACGCGAGGAAGCACGCTTGGTTCGTTGTCTGATGCGCACGCGGGGACGACTATGCCTAGCCCGTTGTTTCACCCTGACATCATGGATCACGAGATGGTAGTGAGCAGCACCGGCCAGTCCGGCGGGGTCACCGAGCAGGAGCCCCGGGACGAGGACCATCAGGAGGCGCTGCGCTTCGCTCTGGATCAGCTGTCGCTCATGGCCATGGAGAAGGTGGACTGTCTGGACGGGAGCTCGGCCGGGGAGAACTGCAACGGGGGAGGCGGGTACGTCGACCTGCAGATGCTCGAGCACGCCAACGGCTCCCGGGAGTCCCCCGGCTCCTGCTCGCCCTCTCCGGAGTACTACGGCTCGGGaggcggcggcggcggaggGTACCACCACATGGCCGGCCCGCACTCCTCCATCCTCGGGGAGCAGAGCTCCGTGCTCCGCAAGAGGAGCGTCAACATGACCGAGTGCGTGCCGGTGCCCACGTCAGAGCATGTGGCCGAGATCGTCGGCAGACAGGgttGCAAGATCAAAGCACTTCGTGCGAAAACTAACACGTACATCAAAACCCCCGTGAGAGGAGAAGAGCCCGTGTTCATCGTGACGGGCCGCCGCGAGGACGTGGAAATGGCCAAACGCGAGATCGTCTCGGCGGCCGAGCACTTCTCCATGATCCGCGCCTCGCGCTGCAAAGCCGGCGCGAACGGCCCCGGATCGAGCGGCTCCCTCCCCGGCCCCCCCAACCTCCCGGGGCAGACCACCATCCAGGTGCGCGTCCCCTACCGCGTCGTGGGCCTCGTCGTGGGGCCCAAAGGAGCCACGATCAAACGCATCCAGCAGCAGACGCACACGTACATCGTGACGCCCAGCCGCGAGAAGGACCCCGTGTTCGAGGTCACCGGCATGCCGGAGAACGTGGACCGCGCGCGAGAAGAGATCGAAACGCACATCACGCTTCGCACCGGCGCCTTCGTCGACCTCCAAGGCGATAACGACTTCCACAGCAACGGGACCGATGTGAGTTTAGAGGGACTCGGGTCGCTCGGTCTGGCCAGCGCGCTTTGGTCGCGCGCGACTCACTCGGCGCCGCCCCCGCCGCCGCCGCCTCCTCCTCCGCCGCAGATGCACCATTCGTCGCGCAAAATGTCGTCCGAATCGTTCTCCGCGAGCCGCCGGCCGACGGACGGCGGAGGAAGCCCGACCAGCCCGTTCAGCACGAGCAGCGCCGGAGGGAGCTTCTCATTCGCGGGCGACTCGACTCCGAACTTGCCGGCGTCGGCGTCCGAGGATTTGGGTTTCGAATTCAGCGCCGCCAATATCTGGGCTCCGTTCGCGAACGGCGCCAAGCAGCAGACGCAGGCGGTCCGGCGCAACAGCAGCGGGCTCAGCGGAGGAGCCGTGACCCCGCGCCTTTCCCCGGACCCGGACCACCCGCTCGCCCGCCGGGCCCAGAGCGACCCGCTCAGCACGCTCTCCTGGCTCCAGACGGGCGCCGGAAGCTCGTTCTCGGGCcggagcagcagcagcggcgggAGCAGCACCGGGTACTCGTCCTGCTCGGCGTCGTCGCTCCCCGGCGGCTCGCCCACGGATTCGGAAGGCGGCGGGAGCGGAGCGGGGATCGCGTCCACCATGTTGGGGCGCCTCAAAGCCGGCGGCCTGGCTGGGATGGTGTCGCGGGATTGTTTCGTGTGCTGCGAGAGCGAGGTGACCGCGGCGCTCGTCCCGTGCGGCCACAACCTCTTCTGCATGGATTGCGCCGGGCAGATCTGCCAGTCGCAGGATCCCGAGTGTCCCGTTTGCCACACTCCCGCCACGCAGTGCATCCGGATCTTCTCTTAAACGCAGACTGCCTTGAGTAACTATTAGATATGACACTATTCCCAAttgacagtaataataataataacaataacaacgaCAGTGACTTAATTACCCACTCAAGTACTTGTCGGACTGCGTCTTATCTTTAGCTGTTCATGTTCggtgggttgtttttttttttttttccattcatgcTTCCGACTTTTTCTACTCGCAGATTTTTCGACTTTTACGCTGCACTTTTTTCTAACGCACCCCGTGTTTGCCGATGCAGtcgtttttaaattattgttttcttttaaaaacaaaaaaacaaaaaaaaaaaaacgaacgcGAAAGCTGCGCTCGTTTAGACCAAAACACGAGAGATATTCCCGTTTTTTATTATCGAACGCTTAATATTTATACGCGCCGCGAGGCCGTGCTAGTGGACGTAGGATCAGAGATAGCTAGAATAGTTCATGTTACGAATATCGTTACCGTGCATTTTCTCGTTTCGCCACACTACCTTAAAACGCTCACGTGTCGGTTCGTTCCCGCACTCCAGAAACAGGGTCGCTAGTATTTaacgtgtttttttaaatctgttacGACTTTTTTCGAATCGGGAACGCATGACGAATCGTCTTTCGAATGTCCTAGTCGTGAATGTCCCGGAAATGTCTTTCGCTCGGAGTTCTGCGTCCGTCTTCCGGCCGTCGCGAGAGCGTTTCGTTTACGATCCCCCCCCCCCCCAGACGAGTTTTAACGCGACAAGCCATGCTTTCACACTTCAAAGGGCTTCCGGTTACACACTACACTTTCAGGTCGTCCTGACAAACGGGATGCTAGTCCGCGTGGCAGCTAAATCACCAGGGCTTCCGTACGTTTTAGCGACGCGCGAACGCGAGGGAGAATGCGTTTCGGTTTGTACAGGTTTCTTTTAGATGCGCTCTTAGAGGCTTTTCTTTCGCCGTGTCGGATGTGTATCGAGCTAACGGTGCCTTGGTGGTGAAAACTCGCCGCCGGGAACGAAGATTGTGACGTAACTTCCCTCCGCTCTTCCGGTTTTAGTGATTTGTACAGAAGAGAGCCGTGTCGAATCTGAGCCGCTCGTTTTCTtcttgttgtttaaaaaaaaaaagaagcagcgCAGCTGGTTGAAAGGTACAAGAAGCTAGTCGTTTTATCGGTTGCGTGCGCGTATGTGACGTTTTTTGGTATCGGCGATGAAGGTCACGTGACTTAGTGAAGAATTGGCCTGAAGTCGAACGGTTTCCTTTttcgttatttttattttatttttttcctcgaACAGGGTTCGCTGGGGACGATCTCAGgcggggtgtttttttttttttttgcatcggAACGACGTCAGACGCTGTTTTCCCATGATTCATTGGGGCCCTAAACCCGCTCCGCTTTTACTTTCCGCTTCGATTCGTTTTCGTACGCAGAACCAAAAGCGATTTCAATAACCGGATTTCAGGCCTAACTGTAAATATCCTGAACTACAATCATTGGGATTCGTTTTCAGAAGGTTCATGTAGTTTTTAAAACGCGTATCATTATTTGTAAGTTAAACTCTCTGCATGTCTTGAAGCCGTGAGGCGTTAGCTAAtactttttctaaaaatgaaaagacaaaaaaactttttttacacatttttatttttacaatttatttgcTTACCTTGACGTAAATATCCCAGATTATAATGTGACCCTTTTATTACAGcaaatttatctttattttccatatttctGTTTCCTGTGTACAACATATAGGCAATTTataacaaaatgagaaaaaattattgaagaaatttaaaattgaaatatattttatttgaaagtttATGGACCTTTTAACCGTGAGCTGGAACAATTGTATACACGTATAATTTGAGCTGACTTGACGGTTATAAGAAATGTAtcaagagttttattttttatgcttctttaataaaatcttgtttttgttttcgtttttgtactgtaaaacaatAA

Function

GO: NA

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21584 lncRNA upstream 13219 23003204 ~ 23005138 (+) False LOC122324535
TU21569 lncRNA upstream 138892 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 138892 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 188812 22813266 ~ 22829545 (+) True LOC122328317
TU21587 lncRNA downstream 1385 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 3772 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 21238 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 132703 23158098 ~ 23179131 (+) True G14772
TU21843 lncRNA downstream 154050 23179445 ~ 23179755 (+) True G14778
XM_043219036.1 mRNA upstream 1877 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 1877 23005927 ~ 23016480 (+) True mbd3a
XM_043219049.1 mRNA upstream 13103 23003165 ~ 23005254 (+) True LOC122324535
XM_043264274.1 mRNA upstream 19841 22958987 ~ 22998516 (+) False tcf3a
XM_043222658.1 mRNA downstream 224797 23250192 ~ 23260474 (+) True LOC122327352
XM_043222059.1 mRNA downstream 399299 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 505375 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 538369 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 547703 23573098 ~ 23624866 (+) False mbnl1
TU21525 other upstream 323027 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1089538 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1156915 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1302070 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1536039 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 519711 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 711656 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 910526 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1058443 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1468043 24493438 ~ 24499685 (+) True G15065

Expression Profile