RNA id: XM_043220352.1


Basic Information

Item Value
RNA id XM_043220352.1
length 3013
RNA type mRNA
GC content 0.45
exon number 2
gene id socs6b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14214494 ~ 14218551 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATGATGCAACAGCAAACAAAGAGGGCAGAGAAAAGAGACAGGACAGAGAAAAACGGCAGCTAGCTAGAGAAAAGTTTCAAACGCCGAAAATAGGCACAATTCAAAACGTCCACAGCGTACGGTGTCACTTTATCGCAAAACGCGGTCATAAAGTGCCCATTATTCCTCGTCTCTGTAGAAATTGAGCTCGTTTGTGCGCTGTTTTTGTAAGTGCAGGTATCAGCTAGCCGTGAAGTAATAATGTCTCCTAATGTGATTTCATAGCTCTGCGGATACTGATATGAGAACTGCTGTTAGTTGACAGTGTATTCAAGCCACGGCAGGTATGGCAGTCGTGGGTCGTATGTGATCAGCTATGTGTAAGTGTTCACAGTCATCTCCCTCATCCCAAAAACATTGCGCATAATCCCCCTTCCAGTCATTAAGGGGGATCTTTCAGAATGAAGAAGATCAGTCTGAAAACAATAAGAaagtcatttaatataaaaggcAAGGAAGAGAATGAATTTGCCGTATCACAGCCTGACCTGTCAGCCAGTTTCTCTGCCGAAGACTCTCTATTTGGAGGATGCTACAGCAAAGATCTCGTCAGTAGTGACCTGGATAACGAGGATGAAAAAAGACCCAAAGTCCGATCTAAGAGTGAGGGTCTCATGGGCACCTTGAAAAGGAGACTCTCGGCAAAGCAGAAACCTAAGGTGAAGGGTGGTTCTCCATCGGTATGCTCTATAGATGACGACACCTTCTCTTCTTCCTCGGCACCCATTACTTTAAGTGACATAAAATCCCAGCGTTCCTCCCGCTCCACATCCGTCCATAGTCATCATTACAGTCCCACCCCGTGGCCTCTCAGACCAGTGAACTCGGAGGAGACGTGCATCAAAATGGACGTTAAGGCGTTAATGAACTCCTCAGATCCAAGTCCGGCTCTCAATGGTGTGCGCCAAGACTTCCTAGACCTCCAGAGAGAGTCTAGCGATTCGTTGAAACTCACCAGACGTGTGCCAGACCACAGCTCCGGCGCTCAGAATGGCGATTTGCACCTTGAAATGGATGAACACGTGCCTGTAGTCATTGGTCTCGCAGCTCAGGATTACATTCAATACACAATGCCTTTAGACGATGGACTCTTTCCTGACGATGAAGGTTCACGCTCTTTTTGCTTAGATGGCACCACACCCATGGACGTTGTTCCGCAGTCCGAGGGATGCAGATCTCTTCATGCAGAGGAGGAGGAACCTCTTGACCAGGACCTCCTGTCACCTGACATCTTCATGGAGTCGTCATCGGTGAACCAGCTCTTTTTAAATACTGCAAATGTCTTGCTGCAGGGCTCCAGACTTGAAGCCCCACTTTCCCCCTTGCTACCTCCATTGCCCGATAGTTATCTCCAGAGCTTCTCTGGGTTTGGTGGTACACATGCTCAGGTTGCAGAGAGAGTCATGCACCATCTCAACTTTGACCCCAACTCGGCTCCAGGGGTGCAGCGGGTCTACGATGCCGTGCAGAACAGCGGACCCATGGTGGTTACTAGCCTCACGGCTGAACTGAAGAAACTAGCCAAGCAGGGTTGGTATTGGGGTCCAATTACGCGATGGGAGGCAGAAGAAAAGCTGACGAATCTTCCAGACGGTTCTTTTTTAGTTCGAGACAGCTCAGACGATCGATATCTTCTAAGCTTGAGCTTTCGCTCACAGGGTAAGACTCTGCACACTCGAATCGAGCACTCGAATGGTAGTTTCAGCTTCTATGAGCAACCTGACATCGAAGGCCACGTGTCAATCGTGGATCTGATTGATAATTCGGTCAAGGATTCAGAGAACGGAGCGTTCTGCTATTCCAGATCTCGCTTGCCGGGGTCCGTCACCTACCCCGTTAGACTGACCAATCCCGTTTCAAGGTTTATGCAAGTGCGCTCGCTGCAGTACTTGTGCCGCTTTGTTATCCGCCAGTACACACGGATAGATCTGATCCAGAAATTGCCTTTACCGAACAAAATGAAAGATTACCTGCAGGAGAAGCACTACTGAATGTAGTAAATCCTGACTCGGTTGCTACTTGCACTTTTTGGAAGACATAACGAAGCAGGTTTCGCAAACATTTCAAGAGTTTTGTTACCATTCAATTGCGCATATTTCTGAAAGGAATGATGACGATGTTTGTCGGTCTGGTAGAGTAGATAATTCAGTGGTTTGTGATGAGATGCAGTGCCAGAATGTCGTTAGAGTGTTTGGATCTCAATGTTGGAGCATTTTACGCATGTTCTCGTAGTACTGTAGCATTTCGTTTTTTGTTACAGTCGAAGACAGTCCAGTGTTTTTCTTCATATCCCACACTATGAAATGTCAGCACACAACTCCAGCTTATTTTAGGGCATTTAGAGGTTCTTGGAAAAAATGCACAGAGGTATAGAAGCCTTAATAATGGCCGCACGTTTGTGAATGCGTAGATTACATTCCTCCTCGCCCCTTTTTTGAACACATAACCGTTGTCGTACCAGCCATTGTTATGTCATCATCTTACTCAAAGGGAAAATGTACTATACAATATGCCAAATGATGTCCTCTCGCCATATGTATGATCTTACCCTTCTGTGGAGATAATCTAATAAGCTATATTAGCTGCTCATATTTGTCAGATCATATTTTCATCcaatttttgtttgcattcttTAGCACGTAATGCCAAGTTTAGGTGCCTCACTGAAACTCATCTGTGCTGTAGTTAATTGATTTTGGACTGTATGATTTATTCTGTATAACAGTCATCTTTTAACGAGCATGcagttacattataaatacatctgGTCTTTTCTCCTTCGCATTGTTTAAGTGTTCATTAGCATTGTATATCattgtttaaaatctgaaagATTTCCTGTTATGGACTATGTCAATGGTACAGTTTAAATCATCTCTTTTTGGGAACAGATTTATTTGCTTACTGATATGTTGTAACTTGAACTTGTTCTCcggttcaaaataaaagttttatatgaTTAATCTCTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17537 lncRNA upstream 28708 14136114 ~ 14185786 (+) False G11832
TU17582 lncRNA upstream 47539 14108155 ~ 14166955 (+) True G11856
TU17577 lncRNA upstream 50117 14140050 ~ 14164377 (+) True G11855
TU17578 lncRNA upstream 50117 14140050 ~ 14164377 (+) False G11855
TU17576 lncRNA upstream 63635 14131759 ~ 14150859 (+) False G11855
TU17629 lncRNA downstream 151137 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 153367 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 170434 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 276899 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 341309 14559860 ~ 14603545 (+) True G11914
XM_043219197.1 mRNA upstream 11276 14195559 ~ 14203218 (+) True crispld1b
XM_043257000.1 mRNA upstream 19784 14190469 ~ 14194710 (+) True pi15b
XM_043255093.1 mRNA upstream 60822 14152066 ~ 14153672 (+) True tmem70
XM_043216912.1 mRNA upstream 72637 14139477 ~ 14141857 (+) True rdh10b
XM_043216903.1 mRNA upstream 78483 14117486 ~ 14136011 (+) True kcnb2a
XM_043254388.1 mRNA downstream 15268 14233819 ~ 14241872 (+) True LOC122355826
XM_043257269.1 mRNA downstream 24122 14242673 ~ 14244944 (+) True atpsckmt
XM_043257245.1 mRNA downstream 26704 14245255 ~ 14262414 (+) True march6
XM_043257257.1 mRNA downstream 44013 14262564 ~ 14273620 (+) True ankrd33bb
XM_043218310.1 mRNA downstream 130030 14348581 ~ 14351572 (+) True si:dkey-94e7.2
TU17566 other upstream 34879 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 34879 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1341349 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1341409 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1588107 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 557771 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 557771 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2048492 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2813768 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 3143694 17362245 ~ 17367861 (+) False sppl2

Expression Profile