RNA id: XM_043220484.1


Basic Information

Item Value
RNA id XM_043220484.1
length 3575
RNA type mRNA
GC content 0.44
exon number 21
gene id cop1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16275070 ~ 16285558 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGTTCTCGCGTGAACATCCTGCAgacagtggattgaaatttctAAAGCTCTCAGAGTTGTCAACAAATCTCTGCGGAGCTGCATATCCACATTAGCATCGAGCAGACCCGATGTGAAGTTCTTGCACGGAGAAGAACCACTTCAGCTGTGATCAAAAAAGCGCATTTCATTGCTAACAGCGCGCTTGCTGGAAGTTTCTGCCTCTTTTCTCTCATAGGTGCCGCTTTAGCTAGTTAGCGTATCTCACACAGCCGCCCGGATGCGGTGAAGCCCCGCAGATTTACCTTCAGCTCTGGCCTTCCGACGTGCACGAACGGCTTCAATCATGTCAAGCACtcggcagcagcagcagcagtccgGCGGTGCAGCGGGGTCCGTCCCCGGGACGAGCTCTGGAAGTATGAGTAGCAGTAGCGGCGGCGGCGCCGGTGGAGCGAACAGCGGGAGCGGCGGCGCTCAGAACGGGAGCAGCTCGGCTAACGGGGTGTCCTCGCGGACTCTGGGCTCGGTAGCCGAGGGACAGAGCGCTCGAATGGGCTCGTCGACCAGGAAAAGACCCTTGTACAACGGTCTTATAAATCCGTATGAGGACAAGAGCAATGATTTTGTGTGTCCTATATGTTTTGAGATGATAGAGGAAGCTCACATGACAAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGGCAGAGTTTGGAGGACAGCAACAGATGcccaaaatgtaattatatcaTTGATAATGTGGATCAACTCTACCCCAACTTCTTAGTGAATGAACTGatcctgaaacaaaaacaaagatctGAAGAGAAGCGTCTGAAACGGGATCACCCTAATGGAACCAAATGGCAGGTTTTCCAAGACGTACTTGGTGCAGATCAAGAAAATATGGACTTAGCCAATGTCAACTACATATTAGAGTACctgttgcaaaaaaagaaacaactggAAGCGGAATCACAAGCTGCTCAGCGCCAGATCTTAATGGAGTTCCTGAAAGAAGCcagaagaaataaaagagaGCAACTGGAGCAGTTACAAAAAGAACTGAACTTTTTGGAGGAGGATATCAAACGAGTTGAGGAAATGAGTGGTATGTACACAGTCAGTGAAATGGACCCCAATTTAGACAGTACTGTACCTCAGTTTGAAGCCCCTCCTGCACCCAGCAGTAGCATAATAGACCCCACAGAATACATGCAGCACCCTTTTGGCGGAAGCTCCCAGggtAAAAGACAAACTTGGTACAATAGCACTCTTGCTTCACGGCGTAAGAGACTAACGGCACACTTTGAAGATCTAGAGCAATGCTATTTCTCCAATAGGATGTCTCGAATAACAGATGACAGCAGGACTGTTAACCAACTGGATGATTTCATGGAGTGTCTATCAAAATTTACCCGTTACAACTCTGTGAGGCCTCTGGCCACCCTATCTTACGCTAGTGACCTCTATAATGGCTCCAGTATTGTGTCCAGCATTGAGTTTGACCGCGACTGTGATTACTTTGCCATTGCCGGTGTCActaagaaaattaaagtgtttgaGTACGGCACTGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAATGAGATGACATGTAACTCTAAAATTAGCTGTATCAGCTGGAGTAGCTACCACAAAAATCTGTTAGCCAGCAGCGACTATGAGGGCACTGTCATTCTTTGGGATGGGTTCACGGGACAGAGGTCAAAGGTCTACCAGGAACATGAAAAGCGGTGCTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTCTTAGCATCAGGGTCGGATGACGCGAAAGTCAAATTGTGGTCCACCAACCTGGACAATTCTGTAGCCAGCATTGAAGCGAAGGCCAATGTATGCTGTGTAAAGTTCAGTCCATCCTCAAGATATCACCTGGCCTTCGGATGTGCAGACCACTGTGTGCACTACTACGACCTGAGAAACACTAAGCAGCCCATCATGGTTTTCAAAGGCCACAGGAAAGCAGTGTCCTATGCCAAATTTGTAAACGGAGAAGAGATTGTGTCAGCATCAACGGACAGCCAGCTGAAACTCTGGAACGTGAACAAGCCACATTGTTTGCGCTCATTTAAAGGCCACATAAATGAGAAGAACTTTGTGGGTCTGGCATCTAATGGAGACTATGTAGCATGTGGAAGTGAAAACAACTCGCTGTACTTGTACTACAAGGGGCTCTCCAAGACACTGCTGACTTTCAAGTTTGACACTGTGAAGAGCGTCCTGGACAAGGACAAGAAAGAGGATGACACCAATGAGTTTGTCAGTGCGGTGTGCTGGCGAGCTCTACCTGATGGGGAGTCAAATGTGTTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTTCTTGAGCTGGTCTGAAGGTCCACTCCGATCTGTCGTCAGAACCTACTAAAGACCTGTTGCTTCACTGGTTGGTCGATGCAAGGGCTCTGTAGCTGAGTGGAACTGAAGCAAATATTTCCAAGGAAACAACCAGCAGAACTGGTTTTTATCagcattatatttgtaaaagaCTCAATCATTTTGCGTCGTCTTGCTATCGCTGTATGTGAAATGTTGAGATGAAGATCTGTTTGTGCTGACAGGGAGATTGGGCGAGAATGCCTCTCTTTTTGAATAAAGGTATTAGGAAGTTACTGGAGAATAACTGAACATCTTTAAACATAGAGGGGAAGACACATTCTCAAACCTTTACTAGATGTAATTCTAGCCAGAACAAGAGCTACGAGACATTTAAGGCCAAAGCACAAGACCATAACACAATGAAATACTTTTAGTTCTATAAATTAGCTGTCTTTGATTCCTCGAGCCTGTTGTATCTATTTGCTtgttgggttttgttttttgatacaCTGTCTGTTTATTCATAAGATGTGTGTAAGCTTTGGCGTATTCCGGTGGTCTCCCCGAATTAAATTAcaggacctttttttttgttttgtttttcccccttttttttttagcttttatgtTGGTTAAGTGGACATGCTTATCATATCAAGGGTATTTTTAAGTATACAAGATGTTCTCTTAATTTGGTATTTACTGcaatttgaaattatttcattCTTGTAAATCCCAGGAAGTCCTATACTCATCAGACAACCTTTGCATGAGATTCTTTTCAGTTTCTCCATGTTTTCAAGATCTAATATTTTGCCctttggtcagcggttcctgacaAAAGTGCTTTTAAATTGAGATTGCAGGCATTGACAGTTGCCCCGTGTTCTTTTACATGGTCAAAAATTACATTGAAAGAGTAAATTAGAACTCATCAAAGGTTTAATGACACTATGTATGATTCACTGGGATTATTTAACATCACCCGTAACATTGCTGCTCTTTCATCTTTGAGTTCTTGTacaagtgttatttattttaataatttatagaaATTGTGTGAACATTGAACCCATAATAGAATTTAGGTTTCAAGCTTTATTTGTAAGTCCTCTGATGCATCCTGgtaattctgtttatttactcattttaacacattaatttgaataaataaatgattttttttttc

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18524 lncRNA upstream 10150 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 240162 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 240444 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 396666 15878134 ~ 15878404 (+) True G12491
TU18465 lncRNA upstream 399320 15875184 ~ 15875750 (+) False dars2
TU18588 lncRNA downstream 164595 16450153 ~ 16456532 (+) False LOC122323293
TU18628 lncRNA downstream 405368 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 446179 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 447663 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 449247 16734805 ~ 16776351 (+) False LOC122361622
XM_043260157.1 mRNA upstream 50599 16031983 ~ 16224471 (+) False astn1
XM_043260150.1 mRNA upstream 50599 16031984 ~ 16224471 (+) True astn1
XM_043260163.1 mRNA upstream 50599 16031984 ~ 16224471 (+) False astn1
XM_043260171.1 mRNA upstream 50599 16031984 ~ 16224471 (+) False astn1
XM_043217526.1 mRNA upstream 399306 15860179 ~ 15875764 (+) True dars2
XM_043223811.1 mRNA downstream 39592 16325150 ~ 16443361 (+) True tnr
XM_043217026.1 mRNA downstream 164574 16450132 ~ 16455213 (+) False LOC122323293
XM_043217035.1 mRNA downstream 164808 16450366 ~ 16455213 (+) True LOC122323293
XM_043217636.1 mRNA downstream 210383 16495941 ~ 16497221 (+) True mrps14
XM_043253919.1 mRNA downstream 212151 16497709 ~ 16499702 (+) True LOC122355504
TU18526 other upstream 6273 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1492093 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1492366 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2095455 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 2095455 14175364 ~ 14179615 (+) False G11854
TU18915 other downstream 746761 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1076687 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1281283 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1321694 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1493781 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile