RNA id: XM_043220557.1


Basic Information

Item Value
RNA id XM_043220557.1
length 1577
RNA type mRNA
GC content 0.51
exon number 3
gene id tmub1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15155013 ~ 15161351 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAAACCGGAAGTAGTCGTTGTGGCGTCATTCTATCCTGCCTGTGATCAGGAAGCGCAGACGTTAAACGGTGCGAATCATGGACCATCATACGATGTGATATGTCAACGGTGCCTAGTCTGAAGTTGCCTTAGTCCAGGACACAGCAGACCAGGATGGCTCTAATAGAGGGGGTGGGTGATGAGGTCACCCTGCTCTTTGGAGTGGTGTTCCTGGTGCTCGTCCTGGTTCTGGCCTGGGCCTCCACCCACACTGTTGAACCCCCTGAACACCTCCTGTCACCCAGCCCAGGGACCTCCCCCTCCACAGAGACTGACAGCCAGGAGCCGCTCCCCCCGGGCAACACGGACTCGTCTCCCGGCGGCGTCAGCGAGAACGATAAGAGTGAGCCTGGAACAGACGCGGGAGCGGCGGGACATTCCCCGGATGCTAGTAGGGCTGAAGGAGGCGAGGGAGGCCTCCTGGAAGAAGCAGGGATCGGGAGGGATGGGTTGAGACATCGAGAATCAGCGGGTCCCTCGACTCAAACTCCAGCCAGTGCCCCAAGTGCCACACAGCCTTCAGCCGAAGATGCACCGAATGACACCCAAAGAAACATGGTGCTCAGGCTGAAGTTCTTGAATGATACTGAGAGGACAGCACAGGTCAATCCTCAAGACACCATTGGTTACATTAAACGGACTTACTTTGCTGGACAGGAGCACCAGGTACGTCTGATTTACCAGGGTCAGCTCCTTCAGGATGACGCTCAGACGCTGGCCTCCCTCAACCTGGCCGACAACAGTGTTCTGCACTGCCACATCTCACAGCACGCCACGCGGGCCATGCCTGCCGGGGCTCGGGCTGCTGACCAGGTGCATGTGGCGCTCAACGTGGGCAGCCTCATGGTGCCTCTGTTCGTGCTTATGCTTTCTGTGCTCTGGTACTTCCAGATTCAGTACAGGCAGTTCTTCACTGCACCTGCCACCGCCTCACTCGTGGGCATCACCATCTTCTTTAGTTTTGTTGCGTTTGGGGTGTATCGCCGTTGATGGCTGTTTCTGTCCACTCATAGTCAGCATTTGCGCACATACAGATACACATTCTTTGCACTTGCTCACTCACCAGTGCCAGTGGCAATGTCTTCTGGGAATTTTGGACTTTTCAGGTTTGCTGAAGGCTGTGATTTCAGAGAAACATCTCTGAGGttgtccgtttttttttttttttggttcggTTCATCACTTTTGCCATTTCATCTGCACCAAGTTTATGCTTGTCACAGATagaaatatgctatatatttgattttttaaaaaggaaaaatagagATGCTGATTGTGCCTGTcctctttttcttatttttgttttcatgtgcaTGCTGCCAGTGTGAAACTGGGGCTTGCTTGTAAGAGGGTATGTGAGTTGATGGTGTTTGAGTTTCAAGCAGGGCTCGTCTGGCTGTCTGCCAGACTCAAACTCTGTAGTAAAGCAGTTCAGCTAGAGCTGCTCTTATGTGTTGggacaattaaaataatttgtgtacAATAAGGCTTTTGAAATGGAGATATAATCTATTAAATCATTCTTTTATTTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18059 lncRNA downstream 219988 14934769 ~ 14935025 (-) True G12199
TU18026 lncRNA downstream 299844 14853694 ~ 14855169 (-) True G12175
TU18027 lncRNA downstream 301461 14852910 ~ 14853552 (-) True G12176
TU17995 lncRNA downstream 379522 14773753 ~ 14775491 (-) True G12161
TU18248 lncRNA upstream 61860 15223211 ~ 15223455 (-) True G12308
TU18253 lncRNA upstream 76608 15237959 ~ 15240826 (-) True G12313
TU18255 lncRNA upstream 76608 15237959 ~ 15240826 (-) False G12313
XR_006252728.1 lncRNA upstream 385684 15547035 ~ 15553546 (-) False LOC122359617
XR_006252727.1 lncRNA upstream 385684 15547035 ~ 15553546 (-) True LOC122359617
XM_043224269.1 mRNA downstream 1024 15133971 ~ 15153989 (-) True smarcd3a
XM_043224265.1 mRNA downstream 3210 15133971 ~ 15151803 (-) False smarcd3a
XM_043224277.1 mRNA downstream 3214 15133971 ~ 15151799 (-) False smarcd3a
XM_043220546.1 mRNA downstream 21252 15127984 ~ 15133761 (-) True abcf2a
XM_043218586.1 mRNA downstream 27522 15120587 ~ 15127491 (-) True faim2a
XM_043264169.1 mRNA upstream 996 15162347 ~ 15172881 (-) False fastk
XM_043264162.1 mRNA upstream 996 15162347 ~ 15172878 (-) True fastk
XM_043258896.1 mRNA upstream 15015 15176366 ~ 15177620 (-) True LOC122358915
XM_043258908.1 mRNA upstream 17691 15179042 ~ 15180243 (-) True LOC122358923
XM_043258830.1 mRNA upstream 19614 15180965 ~ 15193045 (-) False puf60a
TU18236 other downstream 3241 15147204 ~ 15151772 (-) False smarcd3a
XR_006247859.1 other downstream 24298 15130599 ~ 15130715 (-) True LOC122328941
XR_006247132.1 other downstream 27522 15122525 ~ 15127491 (-) False faim2a
unassigned_transcript_207 other downstream 280631 14873076 ~ 14874382 (-) True LOC122360578
TU17840 other downstream 544747 14578995 ~ 14610266 (-) True adcyap1b
XR_006247858.1 other upstream 27305 15188656 ~ 15188793 (-) True LOC122328939
TU18553 other upstream 1063428 16224779 ~ 16230221 (-) False pappa2
TU18714 other upstream 1510225 16671576 ~ 16673710 (-) True G12658
unassigned_transcript_208 other upstream 1639080 16800431 ~ 16801951 (-) True LOC122356638
TU18963 other upstream 1644910 16806261 ~ 16806738 (-) True G12839

Expression Profile