RNA id: XM_043220658.1


Basic Information

Item Value
RNA id XM_043220658.1
length 1522
RNA type mRNA
GC content 0.49
exon number 3
gene id htr5aa
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14009083 ~ 14015895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAAACTGCAGCAGCGCGGTCGGTCAGACCTCGGAGCACAAGAACCGGAGACTGACAGGCGTTTACTCGGGATACCGTTTTCAGCCGAATGGGGTGACACTGAAGCAGAAGTGTTCTTGCCGAAAGcTGTTGCAGTCCAGTGAAGATCTTTCTTGTTATTTTGTGAGTGGTGTAAAGCGGACAAAAGAGCACTCGATAACATGGCTGATGCAAGCCAGAACAGCTCCTTTAATCAAAGCTCAGAATATGGAAATGTCTACAGACCACAGACGGTGTTCAGCGTCTTGACTTTCACCCTGCTTGCCATGCTTGTGGTGGCTACATTTTTCTGGAACATGCTCGTCCTAGTCACAATTCTCAGAGTCAGAACGTTCCACCGCGTGCCTCACAATCTGGTGGCCTCCATGGCCATATCCGATGTTATGGTGGCTGCCTTGGTGATGCCTCTCAGTCTGGTCCATGAGCTCAACGGCCGTCGATGGAAGCTGGGCCGAGTTCTTTGCCAAGCCTGGATATCCTTTGACGTCCTGTGCTGTACGGCCAGCATTTGGAACGTGACCGCGATAGCCCTCGACCGTTACTGGTCCATAACTCGCCATCTGGAGTACACGCTGAAAACCCGAAAGAAGATCTCCAACGTGATGATTGGCTTAACCTGGCTGCTGTCGTCTGTTATTTCCCTCTCCCCTCTGTTTGGCTGGGGTGAGACGTATTCAGAGGAGGACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTTTGTGTTGTGCTGTTTGTCTACTGGAAGATATACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGCTGGAGAGGTGAAAGAGGCCTCCAGGCAGCAGCCTCAGATGGTGTTCACGGTACGCCATGCCACGGTCACATTCCAGACGGACAGCGAGACGTGGCGAGAGCAGAAAGAGAAACGGGCAGCTCTGATGGTGGGCATCCTCATCGGAGTGTTTGTCCTGTGCTGGATCCCTTTCTTCCTCACTGAGCTCATCACTCCGCTGTGCTCCTGTCACATTCCACCGGTATGGAAGAGCGTCTTCCTCTGGCTGGGCTACTCCAACTCCTTCTTCAACCCACTCATTTACACAGCCTTCAACAAGAACTATAATAACGCTTTCAGAAATCTATTCTCCAGGCAGCGCTGAGAGATATCAGGAATCTTGAACTTGCCACAAATGCCAGTTTAAGCCACCTTAAAGATTTGGGAAAGTGTGGTCATCTTAGTTCTTCACATTTATGAAGACACGCGTCTTATATATGGATGGGATGATGTCTGGGCTTTTACTGTGAGCCAAAGTGATGATTTGATCCAGCTAAAATGTGCATTGAATTAATATAGACCATGTCTGATGTCTGGCTTTTAGCAGTCAGTTTATGAGTTTATATTTAcagtctatatttatttataataaatatatatatacagataa

Function

GO: NA

KEGG:

id description
K04161 HTR5; 5-hydroxytryptamine receptor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17521 lncRNA upstream 13710 13994791 ~ 13995373 (+) True G11823
TU17503 lncRNA upstream 91892 13904568 ~ 13917191 (+) True G11812
TU17458 lncRNA upstream 307757 13694319 ~ 13701326 (+) True G11779
TU17390 lncRNA upstream 542122 13315229 ~ 13466961 (+) True G11740
TU17543 lncRNA downstream 32822 14048717 ~ 14051620 (+) True G11836
XR_006252504.1 lncRNA downstream 75669 14091564 ~ 14098847 (+) True LOC122357607
XR_006252505.1 lncRNA downstream 75669 14091564 ~ 14098847 (+) False LOC122357607
TU17546 lncRNA downstream 80944 14096839 ~ 14098518 (+) False LOC122357607
TU17582 lncRNA downstream 92260 14108155 ~ 14166955 (+) True G11856
XM_043216938.1 mRNA upstream 16759 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA upstream 16759 13965797 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216932.1 mRNA upstream 18582 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043219234.1 mRNA upstream 104833 13902910 ~ 13904250 (+) True ptf1a
XM_043253272.1 mRNA upstream 116398 13835218 ~ 13892685 (+) True dlgap1a
XM_043256021.1 mRNA downstream 19621 14035516 ~ 14039174 (+) True en2b
XM_043224053.1 mRNA downstream 35858 14051753 ~ 14075443 (+) True rbm33b
XM_043219771.1 mRNA downstream 83455 14099350 ~ 14105505 (+) True dnajb6a
XM_043216903.1 mRNA downstream 101591 14117486 ~ 14136011 (+) True kcnb2a
XM_043216912.1 mRNA downstream 123582 14139477 ~ 14141857 (+) True rdh10b
TU17265 other upstream 1135938 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1135998 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1382696 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1727579 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1728424 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 159469 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 159469 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 760427 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 760427 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2251148 16267043 ~ 16268797 (+) True G12531

Expression Profile