RNA id: XM_043220880.1


Basic Information

Item Value
RNA id XM_043220880.1
length 2351
RNA type mRNA
GC content 0.38
exon number 5
gene id ttpa
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12355888 ~ 12359062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCTTTTTACGTAACGCCTCGGCTCAGAGAGCACGATGACATTCGCTCGACTCGCGCAGATATGAAGTCTGAAGAAGTTGACGACGCGGAGGAATTAAACGATCTGCCTGTTGATTCCGTTCGGATCGCGCCGTATTTGCGTGAACTGAAACAAAGGGCAGCGGCAGAAGTAAGCATTCGACACTTGACTTTGACGGAGGCTTTTTTGATACGGTTTCTGCAGGCGAGAGACTTTGATGTGGCACTGGCTCTCAAGcTTTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAACCGATCTGAGACCATCATCCGTCATAGGACTTCTGCAAAACAATTACCATGGAGTTTTGAGATCACGAGATGACGCTGGAAGTCGAGTTCTAGTCTATCGGATTGGTCAGTGGAACCCCAAAGAATTCACCGCTTATGAGGTTTTCCGTGTGAGCCTCATTACATCAGAGCTGATTGTTCGAGAATGGGAGACGCAAAGAAATGGACTCAAAGCAATTTTTGATCTCCAAGACTGGTGCTTTGCGCATGCCCTGCAGATAAATCCTTCCTTGGCAAAAAAGATATCTTCGGTGCTGACAGACTCCTTTCCTTTGAAAGTACGTGGCATCCATTTGATaaatgagcctatttttttCCGTCCCGTCTTTGCCATGATCCGTCCGTTTCTTCCAGACAAGATCAAACAGCGGattcATATGCATGGAAGTTCGTATGCCCGAAGTCTCAGCGATTTCTTCCCGAAGGCTATCCTCCCCCCTGAGTATGGAGGAACCGGTCCCAGCATAAACGATGCGTGCCACGATTGGACTGAGTACATCATGCAGTCTGAAGCCTATCTCTATAGTCTCTCTATAGATTTAGGTGGAGGAGATGCTTCTCAGTCATCTGCCTATGCGTGATTGTAATGAAGGTACTTCTTACCATGTGCTCTTTGTGCTGGATAATAACAGATTCTGCTGGGCAGGTTAAATGCTTTCCTTGAAAATCAAGATAATATTGCTgacttaaagtaatagttcgcccaaaaaatTTATGTATTCACCCACAGGCCGTTCAAGTTCTCCACTGGAAcagatttggacaaatttagcattacatcaccaGGTCAATAGGTGCCATTAGCATGAGAGAAAAACTTTACAGTAATCCACAAGAAATGaataacacacatatatatatatatatatatatatatatatatattttgttgcttTCAGCTAAAATAAGAGTCCTCTAtgcataatattgctttctccataGGACAAATCATCTGATTTgaataagaaaagaaatattCACAGATCAAGCTCTTTTTAGAAGTCCAAAGTGCTTCAAAAGAGATTCTCGGTTGATGGCTTGAGAGTGAGTACagttttttggtgaaatatacctttaaattgtaaagcattataatatgtatgctttacttttattctttactttttttttatcatattgcaCATGAACTAATGATGCAGCTGTTTAAATTGTCTGCCCAACTCTAATTTTCCagactggaaaaaaacaaacattaattcatatttttgaatgaTGTGATTTTATTGAATTCCATTCCTCGCAGAGATTGATTGCAAATACATGATATACCTCTGAGGATAAAATATAGCATCAGATATTCTGTTACCTTTATAAGGTTTCCACAGTCACTTGTATATAACACAAGTAATGTACAATGTTGTGCATGACCAAAATATCAAAGTGCCTTTCCTCTTTTCCTCGTGAGATGtcattgcttttattgttgTATCTTCATAACAGTGGACATAACTCAGGATGTTAAACAAGTCTCTGTGCTTCTCGACGTTTGATATCAATCAAACTGATGCATCATTATACTGATGCTTTTTAAGTGAAACAATCTTTAATATAACTGTAAACTACAGCATTTGCGATCCTTGGCTgtattccaaataaataaacggcTGAAGACATGTACTTGTTTAGTCTGCACCAAGTGGGAATATTAAATAGCACTTTGGTCTACTGCCTTTTGCTCCGACTCTTAAACAAATCTAAACAGAGACTAATGACCTAACTGGAACTCTTTGTGTTTACAGATTTCCTTAAATGTGAATTTCTGAAACCGTGTATATAATCTAGTTtagtttattgcattatttgtgTCAGACAGTGTCTGATGAAAGTAGAAAAAGAcagttttacattatttaattgtgCCGTCCTCACTTGTTATCAAACTATGAAtatatgactgttttttttaattgaatgtacattttttaaataaaaaagtatatacagACATATTAATACAACTCAAATAAACTTGGCAGCAAAACAA

Function

GO: NA

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17037 lncRNA upstream 16844 12337667 ~ 12339049 (+) True G11505
TU16942 lncRNA upstream 254767 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 737030 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 742327 11609251 ~ 11613566 (+) True LOC122328936
TU17175 lncRNA downstream 186291 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 255313 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 256933 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 264767 12623829 ~ 12624952 (+) False LOC122358236
TU17208 lncRNA downstream 338024 12697086 ~ 12697294 (+) True G11618
XM_043220644.1 mRNA upstream 18967 12333787 ~ 12336926 (+) True lrrc42
XM_043220645.1 mRNA upstream 18967 12333787 ~ 12336926 (+) False lrrc42
XM_043219222.1 mRNA upstream 74686 12278732 ~ 12281207 (+) True rps8a
XM_043262126.1 mRNA upstream 77826 12270887 ~ 12278067 (+) False hectd3
XM_043260495.1 mRNA downstream 2658 12361720 ~ 12376736 (+) False asph
XM_043260486.1 mRNA downstream 5565 12364627 ~ 12376736 (+) True asph
XM_043260504.1 mRNA downstream 5565 12364627 ~ 12376736 (+) False asph
XM_043260516.1 mRNA downstream 10687 12369749 ~ 12371452 (+) True LOC122360148
XM_043217968.1 mRNA downstream 17895 12376957 ~ 12380610 (+) True impa1
XR_006247863.1 other upstream 74389 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 75234 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 75879 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 418303 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 850163 11502402 ~ 11505730 (+) False mast3a
TU17183 other downstream 264761 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 508921 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 508921 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1816302 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1816302 14175364 ~ 14179615 (+) False G11854

Expression Profile