RNA id: XM_043221119.1


Basic Information

Item Value
RNA id XM_043221119.1
length 1966
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC122326319
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8795293 ~ 8807466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttcattttgacttATGATTAAACACCACGGCTCCGCAGTCCAAGTTCTTAAGGCGTTGATGAAGAAATCCGTCAACTTTGTACGGACCGCTGTCATTGGGTGACTGCGTGCTCCCCGGccgtgcttttatttttaatatgaggGAGGGGGTTCCCAGAAAATACCTCCTCCTGCTGTTCCTCGGCTCTATCTCGTGAATATCAAACACTCGCCGTCTCCATATTGGAAGCAGAGATCAGAAAACACAGGAAAACATGAAGAGGCAGTTTTTGACGATCGCTTAAGCGCGCGGACGTCGGCGTTCTCCGCTATAGCTCCGGGAGTTTAAACGCAAGCGTTCAGACGTCGCGCGGGTCATTTATTCAGCCCGCGTTTGGAGGTTTCATGGTCAGCGCGCTAACGCTATCTTACATTAGCAACCCAGCCTCCAACTACTTGTTAGCCGTTCGGCGCTGGCGCGACTGGTTTTTGTTATGCGCGTCCACACGGGCTGATTGATCAAATGTGTGTCCGCGACGCGTATTTTAATGCAACAAAACGCAAAGATTAGTGGTCGGGTGCAGTCCGTTCGCCCACGCTAGCCTGAGCGACAGCAGTCTGCTGCTGGCTGGAGGTCTGCCATTAACTCGACTAGCTGTTAGCACAAGCTGAGACACGGACGCGGCCAGAACTCGCTGGAAAAAAAAGGAGCTAACATCTCGTTTCCATGGACAACACGTCCATAATAACGCAGGTTACGAACCCCAAGGAGGAGGAGATACTCTCGTCAAATGCTGAGAAAGTGTCGCTGTCTAACAGCAGCCTGAAGAAGAAGAGGACTCGCAGCATCTTCAGCTCATTGTTCTGCTGTCTGAGAAGTTACGATGCCGAGCCCCCCGCCGCCcccaacaacaacagcagcccTCTGCCTCCACCTGTGGAGGAGAACGGAGCTCCACCAAAGTGTGACCAGGTTGAGGTCATCCCTATCCCCAGTCCTCCAGAGAAGTACCTCCTCCCTGAGGTTAACATAAATGACTATGGGAAGAAGTGTGTGGTGATAGACTTGGATGAGACTCTGGTGCACAGCTCGTTTAAGCCCATTAGCAACGCTGATTTCATCGTCCCAGTGGAGATTGACGGCACAGTGCATCAGGTGTATGTGTTGAAGAGACCTCATGTCGACGAGTTCCTCAAACGAATGGGGGAACTGTTCGAGTGCGTGTTATTCACTGCAAGCTTAGCCAAGtatgcTGATCCCGTCTCGGATCTGCTGGACAAATGGGGAGCTTTCCGAAGCCGTCTTTTCCGGGAATCTTGTGTGTTCCACCGTGGAAATTATGTCAAGGACCTAAGCCGTTTAGGCAGGGATCTCAACAAAGTCATCATTGTGGACAACTCGCCAGCCTCCTACATCTTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGATGACATGTCCGACACAGAGCTGCTGGATCTTATCCCTTTCTTCGAGAGACTGAGTAAAGTGGATAATGTCTACACTGTGCTGAAGCAGCAGAGGACTACTAGCTAGCACGACACTAGGCTAGCCACTGTCACTATGGGGCCAGGGAGGCTGCTGGGCTCGGAGCACCACAGTGCTTCCCCTTAACAGGACCAGCCACTAGCTCAGTCCTCATCACCTACCCAGAATTCCATTCACATGATGTTTAATAGAGAAAAAGAAGTTGAAAGACAGAACTGTGAAGGACTGCTTTAGCTATTACGTGCATAAAACAAGAAGCTGATTGTTTTAACACTCAATTGCGTAAATCTCAGGAAAGCGAGCAAGAGCCTATTTCACCCTGAAGTCAAATAATAGAATTAGATTTTgcttaaagaaaatgaaagacatGCCTTTGTGGCAATTTTTTGACCACTAAGCACATTCCCTCAAAATTTTGCCATAATGCTTACATTTCttgtaatgtgtaaaaaaataaataaaaataaaat

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15482 lncRNA downstream 40148 8754849 ~ 8755145 (-) True G10389
TU15417 lncRNA downstream 164687 8630406 ~ 8630606 (-) True G10345
TU15173 lncRNA downstream 724940 8070154 ~ 8070353 (-) True G10194
TU15162 lncRNA downstream 860668 7934401 ~ 7934625 (-) True G10185
XR_006247832.1 lncRNA downstream 1003683 7788737 ~ 7791610 (-) True LOC122328801
TU15540 lncRNA upstream 122024 8929490 ~ 8930083 (-) True G10432
TU15546 lncRNA upstream 135633 8943099 ~ 8943593 (-) True G10438
TU15662 lncRNA upstream 520336 9327802 ~ 9331243 (-) True G10518
TU15716 lncRNA upstream 643094 9450560 ~ 9450926 (-) True G10569
TU15709 lncRNA upstream 649697 9457163 ~ 9461084 (-) True G10562
XM_043256112.1 mRNA downstream 164994 8626930 ~ 8630299 (-) True zgc:110269
XM_043224391.1 mRNA downstream 169021 8618514 ~ 8626272 (-) False agfg1b
XM_043224381.1 mRNA downstream 169021 8618514 ~ 8626272 (-) True agfg1b
XM_043222070.1 mRNA downstream 178304 8615122 ~ 8616989 (-) True fbxo36b
XM_043253349.1 mRNA downstream 180466 8613547 ~ 8614827 (-) True LOC122355259
XM_043216781.1 mRNA upstream 71973 8879439 ~ 8886277 (-) False sh3glb1b
XM_043216764.1 mRNA upstream 71973 8879439 ~ 8886276 (-) True sh3glb1b
XM_043216773.1 mRNA upstream 71973 8879439 ~ 8886272 (-) False sh3glb1b
XM_043216792.1 mRNA upstream 79202 8886668 ~ 8889940 (-) True selenoj
XM_043255533.1 mRNA upstream 136942 8944408 ~ 9001261 (-) False LOC122356610
XR_006253094.1 other downstream 367390 8403327 ~ 8427903 (-) False zfyve9a
TU15203 other downstream 687505 8106856 ~ 8107788 (-) True G10213
TU15175 other downstream 723459 8070776 ~ 8071834 (-) True G10196
TU15155 other downstream 1010139 7784468 ~ 7785154 (-) True G10178
TU15133 other downstream 1301449 7492206 ~ 7493844 (-) True G10170
TU15605 other upstream 380022 9187488 ~ 9188109 (-) False abca4b
TU15736 other upstream 692673 9500139 ~ 9519522 (-) False plppr5a
XR_006253077.1 other upstream 1314301 10121767 ~ 10139585 (-) False pkn2a
TU16135 other upstream 1334577 10142043 ~ 10143668 (-) False lmo4
TU16347 other upstream 1568597 10376063 ~ 10378211 (-) True G11011

Expression Profile