RNA id: XM_043221226.1


Basic Information

Item Value
RNA id XM_043221226.1
length 2841
RNA type mRNA
GC content 0.44
exon number 24
gene id abcd3b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9239632 ~ 9248291 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTGTGTTGTTTCTAAGGAGGAATCCGCCGCGTGGGTCCTTCATTGGCCGCCGTCGCTTCCTGATCGGTTTCATATTGAACATGGCGGCTGTTAGTAAGTATCTGACAGCCGGCAATTCCTCTATCGCAGGTGCTTTGCTTTTCGCCTTGTATGTATTGAAACAAAGACTGTCTTCGGAAACCAATGGAGAGAAAGGGACGCCAAAACCATTGTTGGACAATGCTaaggatagaaagacagacaagGCTGCGGTGGACAAGGTGTTCTTCAAGCGCATTTGTCATATCATCAAAATCCTGTTGCCACAGACCATTTGCAAAGAGTCCGGATATTTGCTTCTCATCGCTGTCATGCTCATGGCCAGAACCTACTGTGACGTCTGGATGATACATAATGGGACCATGATCGAGAGTGCAATTATTGGACGTTCGACAACCTCGTTCAAAAGATACTTGGTCAACTTTATCACAGTCATGCCTTTTATATCTCTAGTAAATAACTTGTTAAAACTGGGACTCAACAAACTGAAGCTGTGTTTCAGAGTGAGACTGACCAATCAACTTTACAATGACTACTTGACGGGGTTCACGTACTATCAAATTGGCAACCTGGACAACCGTATCGCCAACCCAGACCAGCTGATAACTCAAGATGTAGAGAAATTCTGTAACAGTGTGGTTGACCTCTATTCCAACGTCAGCAAGCCTCTACTAGACATATTGATCTACATCTGCAAGCTGAACACAGCCATCGGATCTCTTGGTCCAGCTAGTTTGCTGAGCTATCTGGTGTTTTCTGGTCTGCTCCTTACGAGGCTGCGCAGGCCGATTGGAAAGATGACCGTAACAGAGCAGAGGTACGAGGGGGAGTACAGATACGTCAACTCTCGCCTCATCACTAACAGCGAGGAGATTGCATTCTACAACGGAAACAGGAGAGAAAAGCAAACGATCAACGGCACATTCCAGAAACTGgtGGACCACATGAGTCGCTTCATACACTTTCGTTTCTCAATGGGTGTCGTGGACAGCATCATAGCCAAATACATAGCAATGGTGGTGGGCTACCTGGTTATTAGCCGGCCCTTCCTGGACCTCACAAACCAGAGACATGTGAACAGTACGTACTCTGAACGACTGGAAGACTACTACCAGAGTGGGCGGATGTTGATGAGTTTGGCACAGGCCCTGGGAAGGATCGTCCTGGCCGGCAGAGAGATGACCAGACTGTCCGGGTTCACTGCGCGGATCACAGAAATTCAGGAAGTGCTTAGGGAGCTGAACTCAGGCAGATATGAACGGACCATGGTAACACAGAGACTCAAAGATGATTCAGTAGAGAAAATCCCTCTCACCCCCGGGAGAGGTGAAATCATCATCACTGACAACATTATCAAGTTTGAACACATACCTTTAGCGACGCCCAATGGAGACGTCCTTATTCATGACTTGTCTTTTGAGGTGTCTTCTGGGACAAACGTGTTGGTCTGCGGGCCCAACGGATGCGGAAAGAGTTCACTCTTCAGAGTGCTGGGAGAGCTGTGGCCTCTGTGTGGAGGACAACTCACAAAACCAGAGAGAGGGAAACTCTTCTATGTTCCTCAGAGGCCCTATATGACACTGGGTTCCCTTAGAGATCAGGTGATTTATCCCGACACAcatgaagaacaaaagaagaaaggaacgTCTGATCGGGTGCTGAAGGAATATCTGGACAATGTCCAGCTGGGACATATCCTGGAGAGAGAGGGCAGCTGGGACAGTGTGCAGGACTGGATGGATGTCCTCAGCGGAGGAGAGAAGCAAAGGATGGCTATGGCTCGTCTGTTTTACCACAAGCCCCAGTTCGCTATTCTGGACGAGTGCACCAGTGCTGTGAGTGTGGATGTGGAGGACTTCATCTACAGACACTGTCGGAAGGCTGGCATCACGCTGTTCACGGTCTCCCACAGGAAATCACTATGGAAGCACCATGAGTATTACTTGCACATGGACGGAAGAGGAAACTACGAGTTCAAACCCATCACGAAGGAAACGGTGGAGTTCGGATCGTAATAATCATGATAATGACCTTTGGCCTCATTCATGAGCCaatcatttgtaataatattcttaAATCGCTGCTTGTGAACGTTTGTGCAGGAATGATTTTACACAGAAGTTCAAACTCATTCATGAGGCCTGTTGGGACTGAATGCGGGTCGGAAGCAATATTATTGTGCACCTATTCAGAATTCATAACTCTTTATAAGACGTTGTTTAACGGAACGGCTTTTCTTCCTCTGAGGGAAAGGATTGTAACTCTGTGGATAAATATCTCTCAGGGAGAGGTTACTGtgcattatattaaatagatttttgtaaGGAACGAAACTGGGTTTGTTAtcccttttaaaaatcaagcatttgtataaaatatgaaaatcatgtttttgttgtgatgatttgtgttttgaaactGTAACGTTGTTGCATGACACTGgtataattacagtaatatggAAACTGTATTTAAGTGTAAAGAGCTGTCTATATGAAATATTGAAGCCTAATATGTTTGAGAACCTACTGGATACATTGTGCCTTTAAAGAccggttttattcattttactgaATTGCAGAACGCACAATGAAATATCTTGTGTgagattttaaaagcaaagaaattctacattttaatgtcaatttgtttttcttccattATTCGTTTTATAGGAGCTGAAATATGGGATGGGTTACGGTTTTGGAACACATACacaattatttgcattttattttcaatgtaagGTTTTAGTCCTGAAatggaagaaaaagagaaataaataatagtatatcTTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15580 lncRNA upstream 22968 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 181773 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 183387 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 298446 8939969 ~ 8941186 (+) True G10433
TU15539 lncRNA upstream 309559 8929504 ~ 8930073 (+) True G10431
TU15704 lncRNA downstream 206075 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 237886 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA downstream 237886 9486177 ~ 9510133 (+) False G10571
TU15733 lncRNA downstream 328880 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 354075 9602366 ~ 9603843 (+) True G10604
XM_043254902.1 mRNA upstream 59325 9173853 ~ 9180307 (+) False tecrl2b
XM_043254892.1 mRNA upstream 59325 9175185 ~ 9180307 (+) False tecrl2b
XM_043254885.1 mRNA upstream 59325 9175210 ~ 9180307 (+) True tecrl2b
XM_043256072.1 mRNA upstream 68665 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA upstream 69847 9162611 ~ 9169785 (+) True olfm3b
XM_043223752.1 mRNA downstream 7094 9255385 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223748.1 mRNA downstream 20464 9268755 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223743.1 mRNA downstream 23135 9271426 ~ 9277476 (+) True si:dkey-10f21.4
XM_043219505.1 mRNA downstream 29472 9277763 ~ 9281294 (+) False LOC122324815
XM_043219496.1 mRNA downstream 29613 9277904 ~ 9281294 (+) False LOC122324815
XR_006252402.1 other upstream 67717 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1131855 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1657247 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2252513 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2547257 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 498303 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 663337 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 663337 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1462839 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1991835 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile