RNA id: XM_043221692.1


Basic Information

Item Value
RNA id XM_043221692.1
length 1944
RNA type mRNA
GC content 0.45
exon number 13
gene id rpap2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7176935 ~ 7185014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGCTGGCCGCTTGCCGTAGTGCTGTGACGTAGGCGGAAGGAGTTTTGTTTTGAGAAGACGAGCATGGAAACGACCGGAAAGATTCAAGCCtcaaaatcaaaaaagaaagGTGGTAAAGGAACCAAGGTGATTTCAGCAGCGGATGAGGCGAGAAAGAGGGAAGCTATTAAAGAGGCGCTTAGAAAGAAACTAGAGTTGGAGCGCAAAGCCCTGCAGGTGGTTGAGCGACTGCTGGAGGACAGCGTGACAGAGGAGTTTCTCATTGACTGTGCGTGGCACATCACTCCTGCCAACTACAAAGATACAGTGGAAGAACGGTCCATTGCTAAACAGTGTGGATATCCTAGGTGTCCAAATAAACTAACAAATgtACCCACTCAGCAGTTTAAAATATCCACCAAAACTAACAGAGTCTATGACATTACAGAGCGCAAGtgtttttgcagTAATTTCTGCTACAAAGCCTCCAAATGTTTTGAGCTCCAGCTCTCAAAAACTCCACTTTGGCTCAGAAAGGAGGAGGGaccacCTGAAGTTAAGCTGATGAAAGAAGGAGAGGGAGGCAGCTCTGGACAGGAAATAAAGCTGGTAGACAGGCCTGTGACAGAAGCTGACATTGAAAATCCTGTCCCAGACGTTCCTGAATCTCACAATGACTCCCCTCCTCACAACCCGAGCGACCACAGTGACATTGAGCAAGACTTTGTCTCCAGTGTGGTGTCCAAACAGCATAAACACGTGAGGGTACACTGGGGAAAACTGCCAAAGAGGGACGAAGTCAGTGAGGAAAGGtcaaatactgaaaataagCAACATCCAGAACCTACAGGAACACTAGATGGAGAAAACAATGATGAAAATAGATCTTCAATAACCCCTCAACCACAGATGGACCCAACTGCCAATCTGTCTATACCAAATAAAACCACATCTGCTGTATCTGATGTTGAAGGAACTCTGGATCTTTTGAATCAGTGTAGCCTAAAGGACATTGCAATCGACCAGGAAACCAACCTTTCTTCACAGCCTGAGATTGGAAACTCCACCCCTCCCGCTAGTGGTCTGCACATCACTCAGGTGAGCATGAGTAAGAGAGGAGCTGCCAGCCTCAAAGGCTTGTTGAAGGACCATAACAAAGCTAAAACAACTACATCCATCAGTGTGTGCCTTCTAGAGCATCTAAAGCAAACGTTTATAGAGTGGAGAACTGAGGAAACCACAAAGTTTCTTTATGGGCCTGATTATGCCTCTGGTACAGAGGTTTCTGCACAGGAAGTGGAGGAACTGGATGAAGATGACCTGGATGAGGCTGAGGTGGAAATGAGCTTAGACAGAACAGTGGATGTTCTTCCGGACCCCTGTGCTTCAGCTCCTGATTTTCAAACTCTGCGGAAGGAGACCGAGTTGCTGGAGCTGAGAGTGAGAGAGTTTTATAATGGAGTATATGTTCTGCCTGAAGATGTCAAGGCAGATGCTATCAAAGACATTCAAGACAAACAGGACAGTGGGAAGGACCCTCCTCTACCTTTGGTTGATTCTCATGCGCAGCATCTGATTCAGAAACGCATTGCTGTGGAGAAGCTCAGCCAGAGcTTGAGAGATGTTGTGGGACCTCTGCATCTAACGATGAATGATGTAATCAATGACATAAATAATCTGGTCAGGACATTCAGGTTTACAAGCGTTAATATCATTCACAAAAGGCCAGAATGGACTTTAATTGCTGTGGTTCTTCTGTCAGTATTAACAGAAGTGTCACCGTTGCTCAGAGAGTCATTGGCAAGTCCATCTTCATTGGAGTACATCTCCTCTCTCATGAGAGAGCTGAAACTGGAGGACAAAGATCTACACAACCTCGTGCTGCTCTTCAAACCGTGTTTTACTTCACAAACATAATGTACCACATGCACATTTAGAGTTTATATTAAAAGTGAAACAATGA

Function

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14819 lncRNA upstream 76274 7099628 ~ 7100661 (+) False lrrc53
TU14808 lncRNA upstream 125941 7050725 ~ 7050994 (+) True G9940
XR_006247410.1 lncRNA upstream 133847 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 140437 7036121 ~ 7036498 (+) False LOC122324999
XR_006247246.1 lncRNA upstream 140475 7036056 ~ 7036460 (+) True LOC122324999
TU14902 lncRNA downstream 4641 7189655 ~ 7196400 (+) True G10012
TU14903 lncRNA downstream 12076 7197090 ~ 7199537 (+) True G10013
TU14910 lncRNA downstream 21493 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 25724 7210738 ~ 7210938 (+) True G10021
TU14967 lncRNA downstream 100664 7285678 ~ 7300079 (+) False gng12a
XM_043221724.1 mRNA upstream 6820 7164705 ~ 7170115 (+) True cdc7
XM_043221740.1 mRNA upstream 6820 7164705 ~ 7170115 (+) False cdc7
XM_043221756.1 mRNA upstream 6820 7164705 ~ 7170115 (+) False cdc7
XM_043221732.1 mRNA upstream 6820 7164706 ~ 7170115 (+) False cdc7
XM_043221747.1 mRNA upstream 6820 7164706 ~ 7170115 (+) False cdc7
XM_043221812.1 mRNA downstream 18287 7203301 ~ 7206402 (+) True rpl5a
XM_043224143.1 mRNA downstream 40076 7225090 ~ 7236113 (+) True mtf2
XM_043223526.1 mRNA downstream 51925 7236939 ~ 7254571 (+) True ccdc18
XM_043223534.1 mRNA downstream 51925 7236939 ~ 7254571 (+) False ccdc18
XM_043223539.1 mRNA downstream 52339 7237353 ~ 7254571 (+) False ccdc18
TU14783 other upstream 189816 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 484560 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 486156 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 808981 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 954416 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 320577 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 921851 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1977597 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2561580 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2726614 9911628 ~ 9916861 (+) True znf414

Expression Profile