RNA id: XM_043221740.1


Basic Information

Item Value
RNA id XM_043221740.1
length 2260
RNA type mRNA
GC content 0.43
exon number 11
gene id cdc7
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7164705 ~ 7170115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTGGAAGTCGccggaaagaaagagagagagagagagaaagcttagCAAGTCGGAAGTTTGTGCAAGTTAacgttatattaatatatttgctgtttattttagaaaaatacgGGGCGATGAATTTAGTGTTAATGTCGGAATAAGCCTTTAAGTTAAAGTTAACTTGTGAACTCTACGCGGTAACCGTTTATACAGATACAGTTTGCTGGGACAGTGTTTCTCATAAACTCGGTAAATAAACCAGTTTCCCACATTATAGCTGTTGGATATTGTGGGATGAAATGGAAGCAGCTCAGACTGTCCAGAGGAACACCCAACAAAGTGTTGGAAAAGGCAGGGGCCAACACAGAATTCCCAGGGATGTTCAGACAGACATTGCATACCTGTATGAAGTCCTGCCGCAGCTATCTCAAATTTTTCGTATTATTGATAAAATTGGAGAAGGTACTTTCAGCTCAGTGTATTTGGCAGAGGCACAGATGACCGATGGATCGAGAAGGATGTTTGCATTGAAACACCTGATTCCTACCAGTCACCCTGTGCGTATAGCTGCTGAACTCCAGTGCCTGACTGTTGCTGGGGGGAAAGATAATGTGATGGGAGTCACGTACTGCTTCAGGAAAGAGCATCATGTGGTAATTGTCATGCCATACATGGAGCATCAAACCTTTGTGGATATTGTTGGCTCCTTGAGTTTTGAGGATGTGAGGCTTTACATCTTCCACTTGCTTAAAGCCTTGAGACACATTCACAAGTTTGGCATCATCCACAGAGACATCAAACCAACTAATTTCCTATACAATCGACAAAAAAGGGAGTACGCTCTAGTGGATTTTGGCCTGGCACAGGGCACTCCTGATACACAGATAGAACTGCTGAAGGTGGTGAAATCAAAAGCTCATAAAGGTGGTGGGTCATCTAAGATGGTGGAGGAATCATTTGGGAAACAGAAACTTGTGCCCTTACCACCCAACACCAGAAACACCTCTCTACAGTCCAGCACTAAAGCACCTGCTAAAAGACCATGCCCAGCTACACGCATTAAACACAGCAAGGGACAGTTTTCAAAACCAAAACGAGAAGGGTTAATTCCATGCAAAATTGTTTCTTCAAAACACTGTTCAGTACCAGCGAGAACACCACTGAATCAAAGACAGAAAGCCCCGACTGAGAGTCAAAAACCCAAACCCCCAGCTGTCAGCCCGAGTCTCACCTGCAGCTGCTACATGACTGACCGGGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTAGCTCCGAGGGCTGGTACCCCAGGCTTTAGGGCTCCTGAGGTCCTGACTAAGTGTCCTAATCAGGGAACAGCTATTGACATGTGGTCAGCAGGTGTCATATTGCTGTCACTGCTGAGTGGGAGGTATCCATTTTTCAAAGCCAGTGATGATCTGATCGCTCTTACTCAAATCATGACCATCCGAGGATCTAAAGAGACGATAGAGTCCGCTAAGACCTTCGGTAAATCTATAGTGTGCAGTCGTGAGCTTCCTCGGTTGGATCTGAAGATCCTTTGTGAGACTCTAAGAGGTTTGCGATCATGGGATGACAGCTCACTTCCTGCTGAGTTTCAAGCCTCGCATAACCCAGCAGAAGGAAAACAGGATGCAGGGAGTCCTGTTAAGAAGCACAAGAGCTCTTTCAAAAGCAGTGCAGAGCAGCGGGAGATGGGCTGGGATAAAGTGCCTGATGATGTGTATGATCTCCTGGACAAACTCTTAGATTTAAACCCAGAATCGAGGATAACCGCTTCTATGGCACTGCAGCATCCACTTTTCCAAGATATGACTGATTAATTTTTGTGCCGTCTTTTAATTTGGTATTATTCTGTAAAGAATTACATTTACGCATTTAATTTTCTAACTACATGTTGTACAGCAGTGCAGAGCAGTGTTTTATGTCTTATTTTAGGGCTTTCTTAAGATTCACTTTTGAGAATAAAAAGCTGTTTACAGTCAATTGTTCACAGTTCATCTTAGAGAGTGCTTCTTGCATGTAAAGTTCTGACACATTTTGGGATTTCATTTACGTCAGCTACagttgtaaatttttttttttaaatcagctgcTATTATTTTGTTGTCTGTACTCTCtagtttgtaaataaatgtaggaTTGTTCATCACTGGTACAATATAAGCTGTGACAACTTCAAGATGCCAACCGGTGGCATgatccacatttttttttaagatacttGTTTTACATGCTTAATTGTAGTtact

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14819 lncRNA upstream 64044 7099628 ~ 7100661 (+) False lrrc53
TU14808 lncRNA upstream 113711 7050725 ~ 7050994 (+) True G9940
XR_006247410.1 lncRNA upstream 121617 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 128207 7036121 ~ 7036498 (+) False LOC122324999
XR_006247246.1 lncRNA upstream 128245 7036056 ~ 7036460 (+) True LOC122324999
TU14902 lncRNA downstream 19540 7189655 ~ 7196400 (+) True G10012
TU14903 lncRNA downstream 26975 7197090 ~ 7199537 (+) True G10013
TU14910 lncRNA downstream 36392 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 40623 7210738 ~ 7210938 (+) True G10021
TU14967 lncRNA downstream 115563 7285678 ~ 7300079 (+) False gng12a
XM_043255983.1 mRNA upstream 3513 7157934 ~ 7161192 (+) True cdcp2
XM_043262341.1 mRNA upstream 12934 7126271 ~ 7151771 (+) True ssbp3a
XM_043221692.1 mRNA downstream 6820 7176935 ~ 7185014 (+) True rpap2
XM_043221812.1 mRNA downstream 33186 7203301 ~ 7206402 (+) True rpl5a
XM_043224143.1 mRNA downstream 54975 7225090 ~ 7236113 (+) True mtf2
XM_043223526.1 mRNA downstream 66824 7236939 ~ 7254571 (+) True ccdc18
XM_043223534.1 mRNA downstream 66824 7236939 ~ 7254571 (+) False ccdc18
TU14783 other upstream 177586 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 472330 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 473926 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 796751 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 942186 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 335476 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 936750 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1992496 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2576479 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2741513 9911628 ~ 9916861 (+) True znf414

Expression Profile