RNA id: XM_043221844.1


Basic Information

Item Value
RNA id XM_043221844.1
length 3529
RNA type mRNA
GC content 0.49
exon number 27
gene id pitrm1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23703501 ~ 23715237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCGCATGCGCAGTTTACAGCATGGGACATGGAAGGGCAGAGCTTTAATCATAACGGAAACATGAATCTCGCAACACACATGTAacgtgttttcatttttaaattggtgCGGCAGTCACAGTAATTATTAGAGACAGTAGATTgaagcatctaaaatgtttcgCCATAGCAAGGTATTGATTACGAAACTCAAGAATCTGAGTTTCCAGGGCTCGTGGAGGTCGAGAGGCAGCTCTGCTGTAGAGAGAGCACTGCAGTACACAGCGGGACAGAAGATCCACGGGTTCACTGTAAAAGAGGTAACAGCAGTGCCAGATTTGTTCCTAACAGCCGTTAAACTCTCCCATGATGCCACAGGAGCTCAGTATCTACATGCAGCCCGAGACGATTCCAACAACCTCTTCAGTGTGCAGTTTCGTACCACGCCGATGGACAGCACCGGTGTTCCTCACATTTTGGAGCACACGGTTCTGTGCGGCTCTCAGCGCTTCCCCTGTAGAGACCCCTTCTTTAAGATGCTCAATCGCTCGCTCTCCACCTTCATGAATGCCTTCACAGCGAGCGATTACACGATGTACCCGTTCTCCACACAGAATGCCACAGACTTCCAGAACCTTCTGTCAGTTTATCTGGATGCTGTCTTCTTCCCATGTCTCAGAGAACTGGACTTCTGgCAGGAGGGCTGGAGGCTGGAGCACGAGACCCCCACAGACCCCTCGAGTCGTCTGGTGTTCAAGGGTGTGGTGTTTAATGAGATGAAGGGAGTATTtTCAGATAACGAGCGTCTGTACGCTCAGCACCTGCAGAATAAGCTCCTGCCCGATCACACATACTCTGTTGTGTCCGGAGGAGAGCCGCTAGCCATTCCTGACCTGACCTGGGAGCAGCTCAGACACTTCCACGCCACACACTACCACCCCAGCAATGCacgGTTCTTCACGTATGGGGACTTACCGCTGGAGCAGCACCTGAAACAGATAGAAGAAGAGGCTCTGTCTAAATTCGAGAGAACAGAACCAAACACTGCAGTTCCACCTCAGACACACTGGGACAAACCTagAGTGGATCATGTGACTTGCAGGCCTGACGCCCTCGCTCCTGATCCCATGAAACAAAACACGCTCTGCATGAGCTATCTGCTGGGAGACATCACAGACACGTTTGAGGCGTTCATTCTGAGCCTCCTCTCCTCTCTGATGATCTCTGGTCCGAACTCTCCCTTCTACAAAGCCCTGATCGAACCTGAAATCGGCTCTGACTTCTCCTCTTCAGTGGGGTTTGATGGCAGCACTAGACAAGCGTCTTTCACTATTGGTCTTCAGGGCATGGCCGAGGCCGACACGGAGACGGTCAAACGCATCATTGCTCAAACCATCGATGACATCATCGCAACCGGTTTTGAAGAGGAGCAGATTGAAGCTCTGCTGCATAAAATCGAGATTCAGATGAAACATCAGTCTACCAGCTTTGGTCTAGCTCTCGCTTCAtATGTTGCGACTTGCTGGAATCATGACGGTGATCCAGTGCAGCTGTTGAAGATCAGTGAGAACGTGTCCCGATTCCGGCAGTGTTTGAAGGAGAACCCTCGCTACCTCCAGGACAAAGTCCAGTACTACTTTAAGGATAACACGCATCGACTGACCCTCAGCATGAGCCCTGACGAGAGGTTCTTGGAGAAACAGGCTGAAGCTGAGGAACAGAAGCTCCAGCAGAAGATACAGAACCTCAGCGAAGCAGACCACAAAGACATCTACGAGAAAGGGTTGCAGCTGCTGGCCGCTCAAAGCACGACTCAAGACGCTTCCTGTCTACCCGCTTTAAAGGTGTCCGACATCGAGCCCGTCATTCCCTACACACCTGTACAGCTGGGAACTGCAGGCGGTGTACCTGTACAGTACTGTGAGCAGCCCACCAACGGCATGGTGTATTTCAGAGCCATGTGCAACCTCAACTCCCTCCCTGAAGACCTGAAGATCTACGTTCCTCTGTTCTGCAGCGTCATTACCAAGTTGGGCTGTGGAGAGCTGGATTATCGTCAGCAGGCTCAGCGTATTGAACTGAAGACTGGAGGCATGTCTGTATCTCCACAGATCATACCAGACACCGGTGACCTAGATCTGTATGAGCAGggtatAATCCTCTCATCTTCCTGTCTGGAGAGGAATCTACCCGACATGTTTCAATTGTGGAGTGACATTTTCAACAGCCCTCATTTTGATGACGAGCAGCGTCTGCGTGTGCTGGTCATGATGTCAGCGCAGGAGCTGTCCAATGGCATCTCTTATTCCGGTCACATGTACGCGATGACGCGTGCGGCCCGGACCCTCACGCCCACAGCAGACCTGCAGGAGACCTTCAGCGGGATGGACCAGGTGAAGTTTCTGAAACGAATAGCCGAGATGACTGATCTGACTTCAGTTTTGAGGAAGCTTCCCCGGTTAAAGAGACATCTGTTGAATCCTGAGAGCATGAGGTGTGCAGTAAATGCGACACCACAGAAAATGTCGGAAGTAGCTGGAGAGATGGAGAGGTTTGTAGGTAATATAGCAGCCAACAGGAAGGAGCGCAAACCTGTCAGACCACTCGTTGTGGAGAGAGCATTCGATTCTCAGTCTGGATCATCTGCGAGTCGTAAACTCATCTCAGAGCCTCATTTCAAACCCTGTCAGATGAAGACATATTTCCAGCTTCCATTTAATGTGAACTTTGTCAGCGAGTGTGTGCGAGCCGTCCCGTTCACACACACCGACTATGCCAGTTTGTGCATTTTAGCAAGGATGATGACCGCCAAGTTCCTGCATGGAGAGATCAGAGAAAAGGGTGGAGCTTATGGAGGCGGAGCTAGAATGGGAGGAGGCGGCCTGTTCTCATTTTATTCCTATAGAGATCCAAACTCCACCCAGACGTTGTCAGCTTTCCGCGGTGGAGTAGAGTGGGCACGAGCGGGAAAGTTTACCCAGCAGGACATCGATGAGGCCAAGCTCTCGGTTTTCTCAGCTGTTGATGCGCCTATCGCTCCTTCAGATAAAGGTTTGGGACGGTTTTTAAACGGCATTACAGATGAGATTAAACaaagatacagagagagactgTTCGCGGTGACCGATAAAAACATAATTGACGTCGCCGGCAGgTATCTCGGAGTCGGTCAGCAGACATGTGGGGTGGCTATTCTAGGCCCGGAAAATGAAAGCATCAGAAAAGACCCATCCTGGGTGGTCAAATAGActgttttctcttcttattGTTAGGACTGTGTAAGACACGCACATGCTTCTGGATCACGCAcagaagatttttttcttcatgtcatCTTCATGaggtgcttaaaaaaaaaaaaaaatttaaagtatCACTTATTAGTTCACTAAAACTATTTTGGTTATACGGCACATTGTTGATGGTGGACTTCCATCTTTTTATAACAACGTCAAAAATTATGCTGCAGTGTTGTAATTTGAGTGAGATTTATAAATTGGACATTATTTATGAGATGTAtagaattataataaacatgacCATGTTTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K06972 PITRM1, PreP, CYM1; presequence protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21994 lncRNA upstream 11641 23690422 ~ 23691860 (+) True G14841
TU22015 lncRNA upstream 20103 23668563 ~ 23683398 (+) True G14850
TU22023 lncRNA upstream 20103 23669790 ~ 23683398 (+) False G14850
TU22004 lncRNA upstream 59951 23643012 ~ 23643550 (+) False LOC122355031
XR_006252160.1 lncRNA upstream 59976 23642463 ~ 23643525 (+) True LOC122355031
TU22034 lncRNA downstream 4405 23719642 ~ 23740497 (+) False G14859
TU22036 lncRNA downstream 4405 23719642 ~ 23762825 (+) True G14859
TU22037 lncRNA downstream 7029 23722266 ~ 23722747 (+) True G14860
TU22056 lncRNA downstream 29634 23744871 ~ 23746553 (+) True G14872
TU22074 lncRNA downstream 61866 23777103 ~ 23780120 (+) True G14889
XM_043224637.1 mRNA upstream 1237 23698257 ~ 23702264 (+) True klf6b
XM_043253002.1 mRNA upstream 66071 23634222 ~ 23637430 (+) True LOC122354999
XM_043252978.1 mRNA upstream 73128 23625007 ~ 23630373 (+) True LOC122354760
XM_043252999.1 mRNA upstream 78635 23584222 ~ 23624866 (+) False mbnl1
XM_043255742.1 mRNA downstream 50721 23765958 ~ 23770492 (+) False LOC122356725
XM_043255751.1 mRNA downstream 51134 23766371 ~ 23770492 (+) True LOC122356725
XM_043224831.1 mRNA downstream 57643 23772880 ~ 23775183 (+) True lpar5a
XM_043224868.1 mRNA downstream 68487 23783724 ~ 23786255 (+) True hes6
XM_043217674.1 mRNA downstream 204994 23920231 ~ 23925631 (+) True LOC122323665
TU21973 other upstream 155527 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1008171 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1774682 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1842059 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1987214 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 21814 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 220684 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 368601 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 778201 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1326192 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile