RNA id: XM_043222610.1


Basic Information

Item Value
RNA id XM_043222610.1
length 1851
RNA type mRNA
GC content 0.51
exon number 12
gene id pias4b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22926313 ~ 22937828 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGCTCGGCGAGGTCGGGGGTGATGCTCCATTCGGCATAAACGCCTCCTGCTTCGCTGTATCTTTTATATGGAGTGGCTCGCTCGGATTCAGGAGTCGGAAAAAAACTCTTAGTACTTGTCACTAGAGTTGTGCAAAAATCTGCCGTAAGATTTTGCGTTGTTCTGTAATGCCACCCGTTCAGTCCGTCAGGTCGATGGAAAGGGACGCTGTGAGGCTGTGGATGGTGGTCGTCCGCGGTGTTGGTGCAGATGGCGTTACAGAAAGGACACTGAACCCAACAGCACTGACAGAATCTCATCAGGCGATGCTGGAGGTCCTGCGTGTGACGGAGCTTCGTCTTCTGCTCTCTAAGATGGGCAAGAGTAAAAGCGGCCTGAAGAAGGATCTCGTGAAGAGAGTCGTGGATCTGCTGCACAGCGAGTGCAGTCCCGAGCTGCTGTCCGCTGTCAGAGAGATGCACAATCTCAGACAGGTTTCCAAAGACGCCCGCAGGAGCTCAAAGCCCGGTGCCGTAGACGTCATCTCCATGCCAGTGTGTGTCTCTCCGGAGAAACCCCCGTCGCTCATATCAGCCTGTACAGAACCCCAGATGATCAGACTGCCCTTCTACCAGACGCTGGACACCATTCTGCCACCGACACCTCTGGCGCCCATGTATGGTGGAGCCATGCAGAACTCggatttcttttttcatctcAGTGCAAGACAGCAAGCTCAGATCCAGAACAGCAAGTCGTCTCAGTCTAGTTCAACATGCGTGGTGCTCAGGATGTGCTACAGTGAGAGCATCGGCGTTGAAGAGGACCAGTATCCTTGCATCTTTCAGTTTCACACTCAGTGTTTGTATAGCAAGGGAATTTTGAACATCCCTTCATGTACCTATTCATCTGATAAAGCGGGCACTGAACCTTCTCGCCCGTGTCGTCCCATCGATCTCACGCCTGGCTTGTATCCTACCTTCACAAACCGGCTGTCAGTGGTGTGGGGAAACTTCGGCAAGagttATTCGGCGGCTGTGTATCTGGTGAAGCCCGTGTCGTCTCTGGATCTGTTGGATGAGCTCCGCAGGACCGGCGTGGAGCAGCAGGAGCTCTGCAGACAGAGAGTGTCTGAGAAGTTGCGCTCTGATCCAGAAAATGAAGTTTCTACTACAGGTTTGCAAGTATCACTAATCTGTCCACTGGCAAAGACGCGCATGTCCGTTCCCTGTCGGGCTCGAGGCTGTGCTCACCTGCAGTGCTTCGACGCTTCCTTCTTCCTGCAAATGAACGAGAAGAAGCCCAGGTGGACGTGTCCCGTGTGCCACAGATACGCTCCGTTTGACGAGCTGCGCATCGACGGTTTGCTGTGCGAGGTTCTGGAGGGATGTGGCGAAGATGTGGAAGAGATTGAATATCTGCCTGACAGCAGCTGGAGAGCCCAGAGACACGACGAGAGCCGCAAGAACATCGAATCCGTTCAACATCAGCAGATCAGACACGATGTCGGTCGTAACGGGACGGGCGGCATCGTCGTGGATCTGACTCAGGTGTCCTCCGACGATGAAGACCTCCAGAAAGAGGAGACGGTTTCTACACGTCTAGAAGACAAAAGCGTGCACTTTAGAAAATCTGGCGTAGTCAAAACCTCTAACCCCAAAAGTCGAATAACCCAGGTCCAAATTTATTAAcccaatttatatatatatatatatatatatatttgtaaatatagcCTCTGACAGTAATGTAGAATAACATTTCCAAAGGTTTTTTAGCGTATACTGAACTCGTCGTTCAGTCTGTTCTGTATGTTGTGTGTCTCTTTATTGTGGTGCCAATAAAGTCTCCTttattaaatggatagtt

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21569 lncRNA upstream 46848 22847913 ~ 22879465 (+) True G14589
TU21567 lncRNA upstream 46848 22860184 ~ 22879465 (+) False G14589
TU21556 lncRNA upstream 96768 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA upstream 96821 22813415 ~ 22829492 (+) False LOC122328317
XR_006252487.1 lncRNA upstream 123840 22786721 ~ 22802473 (+) True LOC122357472
TU21584 lncRNA downstream 65376 23003204 ~ 23005138 (+) False LOC122324535
TU21587 lncRNA downstream 88952 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 91339 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 108805 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 220270 23158098 ~ 23179131 (+) True G14772
XM_043223952.1 mRNA upstream 55341 22833068 ~ 22870972 (+) True LOC122328301
XM_043219140.1 mRNA upstream 141467 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 152557 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 168640 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 168640 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043219179.1 mRNA downstream 959 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 21158 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 21159 22958987 ~ 22998516 (+) False tcf3a
XM_043264283.1 mRNA downstream 21160 22958988 ~ 22998516 (+) False tcf3a
XM_043264265.1 mRNA downstream 21161 22958989 ~ 22998516 (+) True tcf3a
TU21525 other upstream 230983 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 997494 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1064871 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1210026 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1443995 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 607278 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 799223 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 998093 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1146010 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1555610 24493438 ~ 24499685 (+) True G15065

Expression Profile