RNA id: XM_043222658.1


Basic Information

Item Value
RNA id XM_043222658.1
length 2743
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC122327352
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23250192 ~ 23260474 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttatccatgtTCCTTTTGTAGTTCTTTCAATGGAAGACTCTACGTAACAATCTATTAAAGCGTCACCTTCATGGATTTCTGTATAGACCTTCTCTGTTGATGTGGACAGAGACAGCGGAGCATCTAGATTGCGGATCAGACCTTCAGTAGAGGAGGGCAGCGGTCGGTGGAGAGCGCGCAGCGGGGAATGCCGGGAGGAGACGGCTTTCCCGATGGAGAAGAGGAGAGCTCTTCTCCAAGCTCCGGCAAGCGTGCGGTGCAGACGGACCAAACTGAGAGCGGGCAGGACCCTGGGACCAGCGGGACCGGATCGGGTTCgggtgaggaggaggaggctgaGGAGCAGCCAGGAAGAACCAGCAGAGGAGAGAGCTCGCCGGGGTGCGAGGAGAGCGGTGGAGAACAGGCTCACGAGGACGTGGACATGAGCAGCGGAAACGACAGCGTCGGCGGGTCACGACATCATCACTCCTCGGCCAATCGCAGCCCTGGAAGCACCACGGGATCGGGAAGCACCAAGAGTTCGAAATCTGCCACTGgttcgtcgtcgtcgtcgtccaGCTTTCACAGCGCTCATCACACAGAGTGCAGTGAGCAGACGGAGCACGGCCGCAAGCAGACGCACCGGGAGATGACGCAGACGGTGCAGGAGATGAAGAAACGGCTGCCGTCTGAGAAGAGAAGCCGCAGCAAAGCCAGCACTGTAGAGGCACTGAACTACGCACTGAAATGTGTCAAACAAGTACAAgCGAACAGCGAGTACTACAACTTACTAATGAGCAGCGGACTGGAGGAGAGACGAGACGCTACCGTGTGCAcgctggaggagctggagggAATCACATCTGAACACACGCTCAAAAACACTGACACGTTTGTGGTGGTCTTCTCTCTGGCCTCGGGGAAGGTGGTTCACGCGTCTGAACAGGCCTCCAGCGTGCTTCACTGCAAGAGGAAGTTTCTGGAATCTGCCAAGTTCGTGGAGCTGCTGTACCATCAAGACGTCAATGTGTTTTACTCGCACACTGCACAACCGCGGCTGCCGCCCTGGAACGTGGGCACAGACAGCGTGGCGGTTCTGTTTGAATGTGCCCAGGTCAAGTCTTTCTTCTGTCGAATCAGAGGAGGGAAGGATCGAGATGGGGAAATGCGCTATAGTCCTTTCCGGATTACTCCGTATCTGCTGAAGGTTCAGGGCCTGAGCGGAGAGGAAGAGCCGTGCTGCCTGGCCCTGGCTGAGCGCATGATCTCCGGATACGAGGCCCCTCGCATTCCCATGGACAAGCGCATATTCAGCACAACTCATTCGCCGGGCTGTGTCTTTTTAGAAGTGGATGACCGGGCCGTTCCATTACTAGGATACCTGCCACAGGATTTAATTGGCACACCTGTCCTGCTGCACCTGCATCCAAGTGATCGACCAATCATGCTCGGCATCCACAGAAAGATCCTGCAGTATGCTGGTCAGCCGTTTGACCACTCCATCCGCTTCTGCGCTCGTAACGGAGAGTACATCACCATAGACACCAGCTGGTCCAGCTTTGTCAATCCCTGGAGCCGCAAAGTTTCCTTCGTCATCGGCAGACACAAAGTTCGCATGGGTCCGGTGAATGAAGATGTGTTTTCAGCTCCGGCCACAGCTGAGGGCAAATCTGTAGACTCTGACATCCAGGAAATCACTGAGCAAATTCACAGACTCCTGCTGCAGCCGGTGCACAACAACGGTTCGAGCGGCTATGGGAGTCTGGGAAGTAATGACCACCTCCTGAGTGTGGCGTCGTCCAGTGAAAGTAACGGCAACGGTACACGCCAGAGACAAGAGGAAGAGGACAGCAGGAGAGCCAAGCCGAGGAGCTTTCAGGAGATCTGCAAAGGAGTCCACATGCAGAAAAACCAGGAGCAGCAGTCCAAGAAGAGCCCTACTAAGTTTCAACAGAAAACTCCAGTGGTACGACCCAAAGATTCTGCGTATCCCGTGAACTGGAGAGGGTCTCCTGAAGAGCAGCATGCTGCGGTGCAAGAGGAGCTGGCCTTTAAAGACCAGACCGTCTACTCCTATCAGCAGATTAGCTGCCTGGACAGCGTAATCAGGTATTTGGAGAGCTGTAACGTTCCCATTACAGTGAAGAGAAAGTGCCAATCTTCCTCAAACACGACATCCTCAAACTCGGATGAAGACAAACAGAGAGGTGCTGAGAGCTCCATGCAAGTGTCTGAAgAGGCCGGCCATCTAAAGGATCAACCGGGTCTGTCATCATTAGATGTGTCCAAGAAGCCTCCAGGCTCTGGTGTAGTGAGCCAGTCTCTGACTCCGCTCGCGCTGCCCAGCAAACCGGAAAGCGTGGTGTCCATCACCAGCCAGTGCAGCTACAGCAGCACCATTGTACACGTAGGAGACAAGAAagtcgTATCCTCAACAAGACCCATCTCTCCAAAGCAAGAATTCTCTTCCAAACTTCAAAAGATCATCGAGGATGTCCCCAGCGCTGAAGGCACAGAAGCTCAGGGTCTCGCTGTTCCTCCGGCCGCGATCTCGCCGCACAATCAGGAGCGAGAGGCTTACAAGAAACTGGGCCTGACCAAGCAGGTTCTGGCGGCGCACACCCAGAAGGAAGAGCAGGCGTTCCTCAACCGCTTCAGAGAGCTGCGAGGTGTGCACGCTTTCAAAGCCGACTGCTCCCTCTATCTGGAGAGACAGAAAGGACAAGTGGCATCTGAGGGTGAGGAAGATTTAATTAACTGA

Function

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009411 response to UV biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21844 lncRNA upstream 69035 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 70437 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 71061 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 200220 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 220313 23029167 ~ 23029879 (+) True G14607
TU21979 lncRNA downstream 290131 23550605 ~ 23553233 (+) True G14832
TU21987 lncRNA downstream 297775 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 381989 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 382538 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 408089 23668563 ~ 23683398 (+) True G14850
XM_043220303.1 mRNA upstream 224797 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 233712 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 233712 23005927 ~ 23016480 (+) True mbd3a
XM_043219049.1 mRNA upstream 244938 23003165 ~ 23005254 (+) True LOC122324535
XM_043264265.1 mRNA upstream 251676 22958989 ~ 22998516 (+) True tcf3a
XM_043222059.1 mRNA downstream 164220 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043253712.1 mRNA downstream 270296 23530770 ~ 23533357 (+) True scg2b
XM_043252984.1 mRNA downstream 303290 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 312624 23573098 ~ 23624866 (+) False mbnl1
XM_043252985.1 mRNA downstream 315634 23576108 ~ 23624866 (+) False mbnl1
TU21525 other upstream 554862 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1321373 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1388750 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1533905 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1767874 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 284632 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 476577 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 675447 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 823364 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1232964 24493438 ~ 24499685 (+) True G15065

Expression Profile