RNA id: XM_043222826.1



Basic Information


Item Value
RNA id XM_043222826.1
length 1022
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC122327448
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24112777 ~ 24115107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACAATCTTTTAGTTTCCCTTATTCTCCTGCTTATTAGAAGAGCAGCAAATATATTGTACAGCAGTGAGGATCTGTGTGAGCAGTCATGGACGGGGGTCTGTTTGTGCTGCTTCTGCTGTCAGGGCTCTTCTGGAGCAGTTCTGCTCTTTCTCGTCCGTACttctatataaatacagcaaTGTCGAGGCCAGATGCTCAGAGTTACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACAACATGGATGACATGAACAGGCTGGTGAATAAAGTGGATGCTGGATACAACGGATCAGTGTGGATTGGACTGAAGAAGCGGACACAGACACGCTGGAGTTGGTCTAATGGAGAAAACATGCTTAAACAGTATAGAAAGTGGAATACGGGACATCCGAACAGTGAAGGAGAATGTGGATGTTTTGCCTTTGGAGTTTGGCATAGCTATCCATGTTCATCACACTTACACTTTGTGTGCTACAGTGGAAATACTGGATACATCAGGGTACAGAAGTGGAAGAACTGGACAGATGCTCAGAGCTACTGCAGATACTTTTACACAGACCTTGTCACCATCCATAACTCCCAGGAACAAAACCAGATAAAGAAACCGATTCTGGGAGATGGTCTCAGTACAGCTGTGATCTACAGCAGCCGTTTATCTGCTATGGAGATAAGTGAAAAGCTGAAGAGCATGGGCCTAGAAAGTGAAAGCAAAATAAGCTGGAGAATGAAGGAAGATGGAGAGACTTTCTTCCCCGGTCaaagcactttccagcacctcTTCCAGAGAATTGAGGTAAGACCTGACCACCAGGTGCTCGCATGCCAGCCCCAACCCCAGACCTGGCTCCAGGGTGGGGCCCCGGCTGTGCCGTGCCAGGCGACGTCACGAGCCAATCACAGCGATCTCCCTCACCTGAGCCACACCTGCACCCCTTCAGGGAATCACAATGATCACTATATAAGCACACACCACAGTTCAGTCAGCGTCTGGGCTCCTATGCATGAAGTGGACTGa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22264 lncRNA upstream 50584 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 64435 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 89169 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 117656 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 118266 23993475 ~ 23994511 (+) True LOC122328496
TU22285 lncRNA downstream 26133 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 31027 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 60178 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 71517 24186624 ~ 24250684 (+) True G15041
TU22317 lncRNA downstream 105879 24220986 ~ 24231256 (+) False LOC122325249
XM_043220920.1 mRNA upstream 1094 24109663 ~ 24111683 (+) True LOC122326195
XM_043222812.1 mRNA upstream 15880 24087971 ~ 24096897 (+) True LOC122327442
XM_043219721.1 mRNA upstream 31273 24079156 ~ 24081504 (+) True LOC122324938
XM_043222800.1 mRNA upstream 39573 24071209 ~ 24073204 (+) True LOC122327432
XM_043222786.1 mRNA upstream 50575 24059412 ~ 24062202 (+) True LOC122327425
XM_043222839.1 mRNA downstream 1635 24116742 ~ 24117634 (+) True LOC122327453
XM_043257880.1 mRNA downstream 126765 24241872 ~ 24249991 (+) True abhd17aa
XM_043220538.1 mRNA downstream 434188 24549295 ~ 24551538 (+) True LOC122325496
XM_043222873.1 mRNA downstream 504880 24619987 ~ 24626282 (+) True LOC122327477
XM_043264542.1 mRNA downstream 621910 24737017 ~ 24754495 (+) True zcchc2
TU22269 other upstream 24336 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 173834 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 375655 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 564803 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1417447 22691251 ~ 22695330 (+) True fcer1gl
TU22338 other downstream 378331 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 926322 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 926876 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 927430 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 928083 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile