RNA id: XM_043222839.1


Basic Information

Item Value
RNA id XM_043222839.1
length 677
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122327453
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24116742 ~ 24117634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTATTAGAATACAGCAGCAGAAAGTGTTGATGAACAGCAGTGAGGATCTGTGTGAGCAGTCATGGACGGGGGTCTGTTTGTGCTGCTTCTGCTGTCAGGACTCTTCTGGAGCAGTTCTGCTCTTTCTCGTCCGTACttctatataaatacagcaaTGTCGTGGCCAGATGCTCAGAGTTACTGCAGAGAGAGATTCACTGATCTGGCTACTGTAGACAGCATGGATGACGTGAACAGGCTGGTAAATATAATAGATGCTGGATACAGTGGATCAGTGTGGATTGGACTGAAGAAGGGGACACAGACACGTTGGGGTTGGTCTAATGGAGAAAACACATCTTCTCAGTACTATAACTGGGCTTCAGGACAGCCAAATGCAGATGGAGATTGTGTTGTTATTTATTCTGGAGTTTGGCATGATATGGCATATGTAGTTATAAGCGATATTTTGTATTGCTACAATGGACATTCTAACACCATGGTACTGAGTGCAAAAACTTGGAGTGACGCTCAGAGCTACTGCAGACAATATTACACAGACCTGGCCACCATCCACAACTCTGAGGAAAATAACCAGATAACTAAGATTATCTTAACCGGATGGTACATATGGATTGACACTGGGCAGCGGGTGAACCATCCCAGAGTTCaggatctggtgactgtgctgGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22264 lncRNA upstream 54549 24061884 ~ 24062193 (+) False LOC122327425
TU22263 lncRNA upstream 68400 24047800 ~ 24048342 (+) False LOC122327416
TU22243 lncRNA upstream 93134 24009525 ~ 24023608 (+) True G14996
XR_006247802.1 lncRNA upstream 121621 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 122231 23993475 ~ 23994511 (+) True LOC122328496
TU22285 lncRNA downstream 23606 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 28500 24146134 ~ 24147389 (+) True G15029
TU22305 lncRNA downstream 57651 24175285 ~ 24211058 (+) True G15039
TU22308 lncRNA downstream 68990 24186624 ~ 24250684 (+) True G15041
TU22317 lncRNA downstream 103352 24220986 ~ 24231256 (+) False LOC122325249
XM_043222826.1 mRNA upstream 1635 24112777 ~ 24115107 (+) True LOC122327448
XM_043220920.1 mRNA upstream 5059 24109663 ~ 24111683 (+) True LOC122326195
XM_043222812.1 mRNA upstream 19845 24087971 ~ 24096897 (+) True LOC122327442
XM_043219721.1 mRNA upstream 35238 24079156 ~ 24081504 (+) True LOC122324938
XM_043222800.1 mRNA upstream 43538 24071209 ~ 24073204 (+) True LOC122327432
XM_043257880.1 mRNA downstream 124238 24241872 ~ 24249991 (+) True abhd17aa
XM_043220538.1 mRNA downstream 431661 24549295 ~ 24551538 (+) True LOC122325496
XM_043222873.1 mRNA downstream 502353 24619987 ~ 24626282 (+) True LOC122327477
XM_043264542.1 mRNA downstream 619383 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA downstream 619383 24737017 ~ 24754495 (+) False zcchc2
TU22269 other upstream 28301 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 177799 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 379620 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 568768 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1421412 22691251 ~ 22695330 (+) True fcer1gl
TU22338 other downstream 375804 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 923795 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 924349 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 924903 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 925556 25043190 ~ 25043271 (+) True trnal-uaa_3

Expression Profile