RNA id: XM_043222873.1


Basic Information

Item Value
RNA id XM_043222873.1
length 1083
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC122327477
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24619987 ~ 24626282 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGAGTGTTTTTGTCCCTCTCACTTTCTCAGGGGGATCTGGGAGGTCAGCGGACGCTGCAGAAGAAGTGGACGTCGTTTCTTAAAGCTAAGCTGGTTTGCTCAATGCCGGAGCTCAACTTTGTGTTCAACGTGGTTCATGACGTGTTTATTCTGAAAGCACCGCACTGGAGAGACACCGTCATCTACGGGGTCTTCACATCTcagtgGGGGAATGTGGGTCTCTCTGCCGTCTGTGCATATAACATGAGTTCGGTGCACGAGGTTTTCTCCAAAGGGAAGTACATGCAGAAGGCCACGGTGGAACAGTCCCACACTAAATGGGTCCGATTTAATGGCATCAGCCCGAGTCCCAGACCTGGAGCCTGCATCAACAACCTGAACCGCATGCAGAGCATCAACTCGTCCCTGCAGCTGCCCGATAAAACCCTGCAGTTTGTGAAGGACCACCCGCTGCTGGAGGACCCGGTGCTGCCCATCGGAAACGGCCCGCGTCTCATCACCAAAGACGTCAACTACACACAGATCGCCGTCCAGAGAGTGCAGGCCCTCGACGGCAGCGTCCACCACGTCATCTTCACCGCCACCGACAAAGGTTCGCTTCACAAATCTCTGGTGTTGGACGGCGAGGTTCACACGGTGGAGGAGATCCAGcttctgaaagagaaagagccgATTAAAACGCTCCTGCTCTCCTCACGCGTGGGCCGGTTCCTGTACGCTGGATCAGACTCTGGTGTGGTTCAGTCTCCCACAGCGTTCTGTGAGAAGTACCTGTCCTGTGTGGACTGTGTTCTGGCGAGGGACCCGTACTGCGCCTGGGACCCGCGCTCGGCCTCCTGCCTCAATATTTTCCAGCATAACGCTGATCCACGgACGTTGATTCAGAGCCTCAAAGGGGATGCTGGGATATGCCCTACAGGTGTGTCATGTAGAAATGTCATCAGTATTAAATTTGTGCTCAAATGGTCCAGTTTCAGtctctgtttttATACAGAGTCCTGTTTGTATATGAGAGGGGAAGAGGTGCATATGCCGCAGGCAAACCTCGAGGACGCCTGGGAGCACTTGAGAGCAGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22350 lncRNA upstream 17195 24523424 ~ 24602792 (+) True G15071
TU22343 lncRNA upstream 106926 24507886 ~ 24513061 (+) True G15069
TU22339 lncRNA upstream 113589 24502752 ~ 24506398 (+) True G15066
TU22341 lncRNA upstream 118671 24500239 ~ 24501316 (+) True G15067
XR_006247535.1 lncRNA upstream 184332 24427986 ~ 24435655 (+) True LOC122326923
TU22484 lncRNA downstream 61274 24687556 ~ 24754591 (+) False zcchc2
TU22492 lncRNA downstream 162603 24788885 ~ 24840993 (+) True G15165
TU22497 lncRNA downstream 170531 24796813 ~ 24797564 (+) True G15169
TU22524 lncRNA downstream 187017 24813299 ~ 24816430 (+) True G15189
TU22581 lncRNA downstream 479421 25105703 ~ 25210816 (+) True G15225
XM_043220538.1 mRNA upstream 68449 24549295 ~ 24551538 (+) True LOC122325496
XM_043257880.1 mRNA upstream 369996 24241872 ~ 24249991 (+) True abhd17aa
XM_043222839.1 mRNA upstream 502353 24116742 ~ 24117634 (+) True LOC122327453
XM_043222826.1 mRNA upstream 504880 24112777 ~ 24115107 (+) True LOC122327448
XM_043220920.1 mRNA upstream 508304 24109663 ~ 24111683 (+) True LOC122326195
XM_043264542.1 mRNA downstream 110735 24737017 ~ 24754495 (+) True zcchc2
XM_043264522.1 mRNA downstream 110735 24737017 ~ 24754495 (+) False zcchc2
XM_043264532.1 mRNA downstream 110735 24737017 ~ 24754495 (+) False zcchc2
XM_043264823.1 mRNA downstream 216496 24842778 ~ 24849115 (+) True viml
XM_043264671.1 mRNA downstream 224481 24850763 ~ 24919804 (+) True pde1cb
TU22338 other upstream 120302 24493438 ~ 24499685 (+) True G15065
TU22269 other upstream 531546 24083838 ~ 24088441 (+) False LOC122327442
XR_006247041.1 other upstream 681044 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 882865 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 1072013 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_258 other downstream 415147 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 415701 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 416255 25042537 ~ 25042619 (+) True trnal-uaa_2
unassigned_transcript_261 other downstream 416908 25043190 ~ 25043271 (+) True trnal-uaa_3
unassigned_transcript_262 other downstream 417461 25043743 ~ 25043825 (+) True trnal-uaa_4

Expression Profile