RNA id: XM_043223600.1


Basic Information

Item Value
RNA id XM_043223600.1
length 4735
RNA type mRNA
GC content 0.48
exon number 12
gene id cdh7a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12488213 ~ 12541573 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAACAATACTTCAGTTCAGTAATTAAATAGTTCAGTAATTAAATTTTATGTtgataaagcattattttaaacctCTGTCGTCCAACATGTGACAAgaattcaattatatatatatgtgtttttcatCGATCATAGATAAAGTTTAGGTGTGTCAActtctttttcttaaatatctttaaaaatgcGAGATCTTGAGCCCACATCTCAAGAACACAGCATCGTCTTGACGAGGTTTTAATTTGGTCCCTCTCTGCTCCCTTTGGCCCCTCGGTGGCCCCCCTAGAATCCTACAATCGCCGCGGCACCTTGGATACGCTGACTGACATCGGCACCTCCCCTCAGTGCAACGTTTCCCTGATGAACGATGCTCCTGTAGCACACTAACAGAGACTTGTCCATTTCGTCTGCCACTTTCACTGGAGACAATAAGTTGCGCGTAACCACTGTTTTCCCAGAGTTTGTGGGGACTGAGGCTCCCGAGGCATGCTTCACGGATGGCCGACAGTGTTGTGGTCCCTTTGTGAGTCTCTCCACAGTGCTCTCCCCTGGCTGAGGTTCGCTGCAGCTGTGGCTTCTCAATAGGGCTTATTGTAGACGCGCGGAGTGTGAGCGAGCAGCGCAGTGATTGAGCGGAACGGAGGGAAAGACGCCTGTAGTGCAGGGATGCTCCTGAATATGTTTCCTTCACTCACTCGGGAAGAGCGCGTCTAGAGCCGCTGCGACGTGACGGAATCCTTCTGCATTTTCACGCGAACGTTCACAATTTACAAACACGCGAAGGACCAGGAGGAAAAGGTTTGAGAGCTTCAGCTACAATCATCGTTCATTCCTGTGGTCCTTCCCATCAATCACCGGTCAGACGGTCTGCTCTATCCAGCTACCCACGCCAGTGCTGAGGGTGGTGCACAGTTTCCCAGGAGCCACCTCTTAGCCTCAAGATCTTTGGTGCCTGTTCAGTACGGAggagtgtatttttttattttcttctttttttacgtTCATCCTTTAATCCAAATGATGCACATAGGCTCTGCAGCGTGGACTGGACTAACTGTAATGACTATGTTGCTGTTAGCCCAGTGGGACGTGGGCTGCTGGGGGATGACTCTGAACTCTATACCGCTCCGCCCGGCATCCCTCAGGCCCTTCAGAGCTAGTGTGGGTGCATCCCTTCAAAGACACAAGCGCAACTGGGTGTGGAACCAATTCTTCGTCCTGGAGGAGTACACGGGAGATGACCCTCTTTATGTTGGCAAGCTTCATTCCGATGTGGACAAAGGAGAGGGGAAAGTGAAATACGTGCTTAACGGCGAAGGTGCAACATCTATTTTCACCATCGATGAGAACACAGGCGACATACATGCCACGAAACGCCTGGACCGGGAGGAACAGGCCTACTACACACTGCGAGCTCAGGCCAGAGACCGGGCCACCAACCTGCCAGTAGAGCCAGAGTCAGAATTCGTTATCAAAGTGCAGGATATCAATGACAATGAGCCCAAGTTCCTGGATGGACCTTACAATGCTCAAGTACCTGAAATGTCTCCTGTTGGCACATCTGTAGTTGAGGTTAAGGCGACTGACGCAGATGACCCCACATATGGAAATAGTGCCAGAGTTGTGTACAGCATCCTTGAAGGACAACCCTACTTCTCAGTTGAACCAAAGACAGgcaTTGTGAGGACGGCTCTGCCCAACATGGATCGAGAAGCACGAGACCAATATCTGCTGGTAATCCAGGCCAAAGACATGGTTGGTCAGATGGGAGGACTCTCAGGGACAACATCGGTGACGGTCATGCTGACGGACGTCAACGACAACCCTCCCCGTTTTTCACGGAAATCCTATCAGTTTGCCGTGCCTGAATCCCTGCCTGTGGCGTCGGTGGTGGCCAAGATAAAAGCCTTGGATTCTGACATCGGACCAAATGCTGAGATGGACTACAGAATTATAGAGGGCGACGGCCTTGGGGTGTTCAGGGTCGCGCCAGACAAAGATACCCAGGAAGGAGTCATAACTCTACAGAAGAATCTTGACTTTGAAACAAAGTCAAGCTACACTCTGAAAATCGAGGCATCCAACAGGAACATAGACCCACGGTTCTTGTCTCAAGGACCATTTAGTGATACAGCGATGGTGAGACTGACTGTAGAGAATGTAGATGAGCCTCCTATCTTCTCCTCTCCACTCAGCAAAATGGTTGTGTCTGAAGCTGCTAAAGTGGGAACCATGATAGGAACCGTCTCTGCTCTGGACCCAGACTCCACCAATAGCCCCATTAGgtaTTCAATAGACAGGAACACAGACTTGGAGCGATTTTTCAACATCGAGGCAACAACAGGAGTCATCAGCACGGCTAAGCCTTTAGACAGAGAAGCCAATGCTGTACACAACATCACCATCCTCGCCATTGAAAGCTTGGATCCGTCGCAGGTTGGAAAAGGAGTGGCTCTGATCACAGTGATGGACATTAATGACAACGCGCCAGTCTTTGCCATAGAGTACGAGACCTTCCTGTGTGAAAGCGTCGGACCAGGACAGGTCATTGAAACCATAAGTGCAGTGGATAAAGATGAACCACCCAGCGGGCATCGCTTCTTCTTCTCCCTCACTGCAGAGACAGCTGGGAACATGAACTTCACCCTCCGAGACAATAAAGACAATACCGCTTCTATCCTAACTAAGAGGGGTGGTTTTCAGAGGAGGGAGCAGTCTATGTATCGACTGCCGGTGTTGATAGTGGACAGCGGGACCCCTGCTCTCAGCAGCACTAACACGCTGTCTATCAGAGTGTGTGACTGTGACCCTGATGGGACGCCCCAGTCATGTGGCACAGAGGCCTTTACTCTATCAGCTGGACTCAGCACAGGAGCTCTCGTCGCCATCCTGGCCTGCATCATCACTTTACTTGTGCTGGTGCTGCTGATTGTGAcaatgaggaggaggaagaaggagCCTCTGATCTTAGACGAAGACCGGGACGTGCGGGAGAACATCGTGCGCTACGACGACGAAGGTGGAGGCGAGGAAGACACAGAGGCGTTCGACATGGTGGCGTTGCGAAACCTCAACGTAGTGAGAGACAGCAAAGCCCGCCGAGACGTCACCCCAGAGGTGCCCACCCTTTATTGCCCCCGCCCTCCCCCCTACAAAATCACCCCAGACAACGGGATCTTTCGGGAGTTTATATGGGATCGCCTAAAGGACGCCGACGTCGATCCTTCCGCGCCTCCCTATGACTCCCTGCAGACATACGCTTTCGAGGGCAGCGGCTCGGTGGCCGAATCCCTCAGCTCCCTAGACTCCCTGAGCACAGACTCGGAGCAGAACTATGACTATCTGAGCGACTGGGGACCTCGCTTCAGGAAGCTTGCCGACCTGTACGGCCATGGCGACAGCAGCAATATATTCTCCTCCTAGCCGGGATTAAGATTCCTGCCAAGGTCTGCTCAATCAAGGGCATAATGGAAATGAACAATGATCAAGAGAATACCACTGACTCATTGATGCTTGACAGAAGAGGGGAGCAAAAAAGGGGAACATTCAGTATGCAGGGGGGAGTTATATCTGCAGAGAGCAGCGGTTTTGATAACCAATAGATGGTGGGGATTCGAGTCGGAAGCACTTCTATTTAAATTGCAGTTAGATGCCAAGACAGGACTCGGGGTGTGGTTGCAAGCTCCCAAAGAGTGATCTTCAGGCCCAAGAGAATAATGGACAGTGGACCGCAGGGCCATGTGAGCTGGTCCAGGAATACCAATTGTTTCGAAGAGACATTTGAAGTGCTCTCCCCATGGTTATAAATGAGAACAGTGCCATCCAGCTAGCCATACAGCAGCGATGCTCGAAAGATCAATGTTTCTGTTCTATCAGATGTTTCTATGACTCATAggttctttgaaaaaaaatcaatatgaatTCAGCAGCCGCTATCTTTTCCGAACGCATTGGCTAGCAAGGAACCGCAACTTATGCTTTGTAATATATCCTTTACGCATAGCTTCACGTCTGTTAACAGGCCTTAGTTCAACGCCAAAATTTGGGTCGAGGCACATTGCTATCACAACCTCTGAAGTATCCTGCAGTTACGCCGACCAAAATACAAGTCAAACTCGTAGTGAATAGACTTTGATGTATCGAGCAGGACAGGCCAGAGTGGATTTAATCATTGAAAATGTATAGTACTTGCCTTTCAGTTGAGGCTGTCAACCTGAGTTATTTTGAGATgttattttgtaagtttgtaGAGAGAACCCTTATGACAGCGAGCGTTTGAAGTGGAGTCTTTTGTATTAAGCCTATTCCTTTCTCGAAAACCTCAGTCTCAGTGGAGAAACTCAAAGCGGCGAAATGTTTTTGTAGTGCTCTATGCTGTCCcgtgtacagttttttttttttttttttttttccgcagtGGTTCTTGCTGAATATCTTGTGAgagctgtttgttttaaagcaggcCTGTTGTCGATATGAGTGGCAAATTGTAAGGGAAAAAAGAATGTAAAGACATTATCCTAAACAATATCTGGCGACATGTGAAATGGTGTATAACATACGGACAACACAGACCTTACTACTACTACAGTATATTCAATGTTTAGCTGTTGTCCGACAGGTTATTATCAAGATTTCAAATTGTAACGGTATGAAATGACAGTAACACATTCTCAGTGCTAAAGCTGGGAAGAAATTTTGTacagatttttgtaataaagCACACAAATTGCAGCA

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06799 CDH7; cadherin 7, type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17037 lncRNA upstream 149164 12337667 ~ 12339049 (+) True G11505
TU16942 lncRNA upstream 387087 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 869350 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 874647 11609251 ~ 11613566 (+) True LOC122328936
TU17175 lncRNA downstream 3780 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 72802 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 74422 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 82256 12623829 ~ 12624952 (+) False LOC122358236
TU17208 lncRNA downstream 155513 12697086 ~ 12697294 (+) True G11618
XM_043217968.1 mRNA upstream 107603 12376957 ~ 12380610 (+) True impa1
XM_043260495.1 mRNA upstream 111477 12361720 ~ 12376736 (+) False asph
XM_043260486.1 mRNA upstream 111477 12364627 ~ 12376736 (+) True asph
XM_043260504.1 mRNA upstream 111477 12364627 ~ 12376736 (+) False asph
XM_043260516.1 mRNA upstream 116761 12369749 ~ 12371452 (+) True LOC122360148
XM_043257989.1 mRNA downstream 88458 12630031 ~ 12650410 (+) True tesk2
XM_043258015.1 mRNA downstream 112305 12653878 ~ 12656884 (+) True si:ch73-382f3.1
XM_043218997.1 mRNA downstream 116473 12658046 ~ 12660442 (+) True selenop2
XM_043219017.1 mRNA downstream 119342 12660915 ~ 12664376 (+) True elovl8a
XM_043219008.1 mRNA downstream 119342 12660915 ~ 12664376 (+) False elovl8a
XR_006247863.1 other upstream 206709 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 207554 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 208199 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 550623 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 982483 11502402 ~ 11505730 (+) False mast3a
TU17183 other downstream 82250 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 326410 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 326410 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1633791 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1633791 14175364 ~ 14179615 (+) False G11854

Expression Profile