RNA id: XM_043223672.1


Basic Information

Item Value
RNA id XM_043223672.1
length 1557
RNA type mRNA
GC content 0.51
exon number 6
gene id pnp5b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22659064 ~ 22665912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTttcattctctcacacacacacacacacacactctgacagagagagagaaagagagagagagagagagagagtgtttaaGCGGAACTTTAGTTCTATTCTTCACTCGTGGCGATGTTTCCAGACTCAAGCACAGGGTACGGTTACGAGGAGTGTAAGGCCacagctgattggctgctggCTCAGGCCCCGGTGCGGCCCCTGCTGGGCGTCGTGTGCGGCTCGGGGCTCGGGGGACTGGCCGAGATGCTGAAAGATCAGACGGCGGTCAGGTACGGGGACGTCCCGGGCTTCCCGCAGAGCACCGTGGACGGTCACGCCGGGAGGCTGGTGTTCGGCACGCTCAAAGGAAAGCCGTGCGTCTGCATGCAGGGCAGGTTTCATCTCTACGAAGGACACCCCATTCAGAAGACCACGATGCCCATGCGTGTGTTTAAGCTGATGGGCGTGGAGACGGTGATCCTGACCAACGCCGCCGGAGGACTCAACCCGGACTTCACCGTCGGAGACATCATGGTCATCAAAGACCACATCAATATCCCGGGCTTCGCTGGAAACAACCCGCTGGTGGGAGAAAACGACAAGAGGTTCGGCGAGCGCTTCCCGTGTATGTCGGATGCGTACGACCGCGGTCTGCAGCGGCTGGTTCACTCGCTCGCGGCCGAGCTGGATTACTCCGGATTCATTCAGGAGGGAGTGTACAGCGCTTTAGGAGGACCGTCCTTCGAGACCGTGGCTGAATGCAGAATGCTGCGTTCTCTCGGAGCGGACGCCGTCGGCATGAGCACGGTTCACGAGGTGATTGTGGCGCGTCACTGCGGGATGAGGGTGCTGGCTCTGTCTCTGATCACCAATCAGGCGGTGATGGACTACGACAGCGAGAAGAAGGCCAATCACGAGGAGGTGCTCCAGACGGGGCAGCTGAGGGCGCAGCAGATGGAGAAGCTGGTGTCCGGCGTGGTCTCCCGCATGGAGCTGGCCGACAGACGACACTAAAACTAAACGACACGCGGCCGGCCGTTACATTCCACCGCCAACGTCTTTTAGGGAACACCTCCTCGTCAAACAGACCAGTCTCTGAGCGCTGCTCCTGCCGCCgcctttatatttattcaaacgtgctttatttaaaacgtaactaaattatacataaaatatgacCGGTCGTGaagaaaatttagttttttttattttttaattaagcaagTATTTTTGTAAAGAAGGACGTTACTGATTTCTGAGTTAAGTGATACTGTATTTATGTGAGCTATTTATGTAAAAGAGCTTCGTCGTGAAGAACGCTGGGATTTGTTACTGCGAGGTACTGAACCTATTTATGTAAAAGAGCTTAAACTATAACGTTTTAAGTTGCACTAAATGACGGAGTGTTTTATGTGTCAGTTTTAAGATCTcaattactgttttactgactTTTACCGGCACTTTTCCCAAAAACGTTTCTTTTATTGACCCGAACGTTAACGTTGCACTTCATCTTTGAGTCTTATAGTTGTTTCTAAATGATCTGCttcaatgcaataaaaaaaacgatGTTGTA

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21485 lncRNA upstream 8221 22643795 ~ 22650843 (+) True G14549
TU21473 lncRNA upstream 72814 22574923 ~ 22586250 (+) False G14541
TU21475 lncRNA upstream 80841 22577023 ~ 22578223 (+) True G14542
TU21474 lncRNA upstream 82772 22522411 ~ 22576292 (+) True G14541
TU21472 lncRNA upstream 82772 22574923 ~ 22576292 (+) False G14541
TU21543 lncRNA downstream 76515 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA downstream 110328 22776240 ~ 22777003 (+) True G14553
XR_006252487.1 lncRNA downstream 120809 22786721 ~ 22802473 (+) True LOC122357472
TU21556 lncRNA downstream 147354 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA downstream 147503 22813415 ~ 22829492 (+) False LOC122328317
XM_043223690.1 mRNA upstream 18470 22638886 ~ 22640594 (+) True foxl2b
XM_043217616.1 mRNA upstream 57610 22592599 ~ 22601454 (+) True LOC122323627
XM_043256244.1 mRNA upstream 87064 22562512 ~ 22572000 (+) True LOC122357060
XM_043260249.1 mRNA upstream 109197 22521251 ~ 22549867 (+) False epb41l3b
XM_043223631.1 mRNA downstream 1400 22667312 ~ 22674275 (+) False LOC122327931
XM_043223641.1 mRNA downstream 1400 22667312 ~ 22674272 (+) False LOC122327931
XM_043223624.1 mRNA downstream 1400 22667312 ~ 22669516 (+) True LOC122327931
XM_043223611.1 mRNA downstream 6189 22672101 ~ 22688316 (+) True ncstn
XM_043259985.1 mRNA downstream 25287 22691199 ~ 22695216 (+) False fcer1gl
unassigned_transcript_253 other upstream 730245 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 797622 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 942777 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1176746 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 1297356 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 25339 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 879194 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1071139 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1270009 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1417926 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile