RNA id: XM_043223826.1


Basic Information

Item Value
RNA id XM_043223826.1
length 2025
RNA type mRNA
GC content 0.46
exon number 12
gene id chrng
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21676444 ~ 21681888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccagGTGCTGGACAGCCTTTCTTCACTAATGCTGCTCTGAGGATATTAAACATGTATCTAATCAACTCTACAAAAACCATCTGGTTATGGAAGCTTCTATCACTTTTATTCTCAGATGCGGTCTGTAATCTAGAAGGATCTCTACACAGAGATCTAATGGTGGGATACAACAAGAACATACGGCCTATGGAAAACCTTGGTGACATCATCGATGTGAAGATCAAGATGACCCTCACAAACCTCATTTCTCTGAAGGAGAAAGAAGAGACCCTCACCACTTGTGTTTGGATTGAGATGaaATGGCATGATTATCGACTCCGCTGGGCTAACAGGACAGGGTTTGAGGTCTATGAGAACATCACACGCATGCGTCTTCCCTCTAAAGCAATCTGGCTGCCCGACATCGGCCTGGAGAACAAtgTGGACGGGCGTTTTGAGGTGGCTCTCTACACCAACGCCCTGATAGATCCTGACGGTAGCGTGGTCTGGTTGCCTCCTGCCATCTACCAAAGCTCCTGTGCAATAAAAGTCAACTATTTCCCTTTTGACTGGCAGAACTGCAGCATGGTGTTCAGGTCAGAGACGTACAATGCCAATGAAATTAAACTGATGCTGTCAGACGAAGACAACATCACCATGGAGTGGATTGAGATTGATCCAGAAGCTTTTACTGAGAATGGGGAATGGATTATTAAGCACCGCCCTGCGAAGAAGGTCTTGAACAAGCGATACAGCCCAGATGATTTGGAGTACCAGGAGATCATCTTCTTCCTCATCATCCAGAGGAAACCGCTGTTCTACATCATCAATATCATCGTGCCCTGTGTCCTCTTCTCATCCCTTGTGCTGCTCGTCTACTTCCTGCCGGCCAAAGCTGGAGGGCAGAAATGTACAATGACCATTGCGAACCTACTTGGTCAGACTGTCTTCCTGTTCCTTATTGCCAAGAAAGTGCCAGAAACTTCCCAAGCTGTTCCTCTCATCGGAAAGTATCTGATGTTTGTGATGTCTGTGACAACAATAACTGTGATGAACTGTGTAGTGGTGTTGAACGTTTCTCTGCGAACTCCAAACACACATCCCATGAGTAACACCATCAGAAAGGTCTTGTTGAACATCCTTCCCCGTCTGCTGAGGATGACGATGCAGCGCTGGACACCTGAGCAGGAGGAAggggattttaaaatgtttgcccTGGGCAACGGCACGCCGCTTCGATGCAGGAGACGAAGCTCTTTGGGATTAATAGCTAAGGCAGATGAATACATGTTCAGAACAGCACGCTCAGAGCTGATGTTCAGTCGACTGAAGGAGAGAAAGGGGATGCTGAAGAACACACTAGAGAAAATACAAAACGGTCTGGGAGGGAACACAGCGCAGGATCTGGAATTCAGTTTGGCTTCAGCGTCACCAGAAGTGCAGCAGTGTGTGTCTTCCTGTAAACACATTGCAGAAAGCGCCAAGCACCAAAATGACTTTCAAAGCGAAAATGAAGAATGGTTTCTGGTTGCCAGGGTGATTGACAGGATGTGCTTTATCGTCATGGCGCTGTTGTTTATACTGGGCACAATCGCAATCTTCCTGATGGGACATTTTAACCAGGCACCAACCCAGCCATTTCCTGGAGACCCTAAAAAGTACCTGCCTGAAATCTCACCTGGAGACATCACAGGCTGAACCCAAGTTTAAAACCAAATGGCAGACTCAGAGAAACCTCCAGCAGACGTCTGGAGGACTTTGTTGAAGATGTTCTGGAGACTAAAAGCCATCAGATTGTTCTATACTATGGCAAAGGAGCTCTCAGCACTTCAGTTTAGTAGTGCTACAGGCCATCTAAAGTGATCAAAGATCTCCAGAGAAGAGAGTTGATTGGATATGAAGCCATTTGAGACTGGCTTCGTTGAGCTTTGATGAGATGTTGATGATTATGAAGGTCATGCTATCTGCTTGTCAATTCCTTTATCAGCTTTCATTTTGTGTGGTGATTTGTTAATGCTttgctcaaaataaaaaaaactaaccttC

Function

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04818 CHRNG; nicotinic acetylcholine receptor gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21083 lncRNA upstream 55347 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 119046 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 305945 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 330343 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 507557 21166088 ~ 21168887 (+) True G13983
TU21152 lncRNA downstream 34883 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 38030 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 129041 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 167319 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 170016 21851904 ~ 21852835 (+) False LOC122327294
XM_043262117.1 mRNA upstream 2844 21652740 ~ 21673600 (+) True prss56
XM_043262118.1 mRNA upstream 38526 21632030 ~ 21637918 (+) True alg3
XM_043217409.1 mRNA upstream 56572 21558145 ~ 21619872 (+) True ece2a
XM_043217417.1 mRNA upstream 56572 21558342 ~ 21619872 (+) False ece2a
XM_043217338.1 mRNA upstream 144160 21504200 ~ 21532284 (+) False yeats2
XM_043223836.1 mRNA downstream 143 21682031 ~ 21687571 (+) True LOC122328123
XM_043223839.1 mRNA downstream 143 21682031 ~ 21687571 (+) False LOC122328123
XM_043254267.1 mRNA downstream 20203 21702091 ~ 21704894 (+) True LOC122355713
XM_043254274.1 mRNA downstream 20206 21702094 ~ 21704894 (+) False LOC122355713
XM_043224622.1 mRNA downstream 32795 21714683 ~ 21716290 (+) True ccl20a.3
TU21079 other upstream 194126 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 314736 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 314736 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 314736 21337682 ~ 21361708 (+) False G14211
TU20650 other upstream 511622 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 33467 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 179003 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 246859 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1009363 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1863218 23545106 ~ 23547974 (+) True G14831

Expression Profile