RNA id: XM_043223839.1


Basic Information

Item Value
RNA id XM_043223839.1
length 1552
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC122328123
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21682031 ~ 21687571 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCGGGAAGGAGAGAGAAGGGCAGGAGGGGGGTGTTTGGTGTAAGAGTAGCATTACAACTACTAACACAGTATTTGAAGCTAGCGTGGaagctgtttctcagtaaaGGACACCACTGCACCTGTCCAGCAGCTCCTAACAACTCAGGACCTCTAATGGCCTCCCCGTCTGTGACCGCTCAGCCTCTTCCGTTTGGACtggaaagagagaaacacaTCGACATGCTCTTCAGAGCTTTCCACAGACAGGTTAGACCTACCGAAGACGTACAGGACCTCACTCCCGCGGATGCAGGCAGGACAAGAGGACAGGATGGAGGAGCTGGATGGAAAGAGAAAGACTGTGAAAGACTGGGAAAACTGTCTGTTCTGAGACCAGTCACAAGACTTCATATTACTACCAGACCGGAACTACAAGGTCCTCAGTGTGTAGCCCGGAGAACATACAGCATTTCCACAGAAAGCAGTGATCAGCTCTTTGTGGCAGTGGAAGAGAGctcatgcatgtgtatgcaGTGCTGTGGTCCAGCTCGATCCTGTTCACTACAAGGCTTTGATAAGGACGCAGAGTGTGTCTTTCTGTTTGAGAGGCCCCTGAGAGCGGAGATGTGCTGGCTCGGCTGCTGCCTGATGGAAATAAGGGCCTATACACCAGAGAGAGATCTTATTGGGACAGTTCACCAAAGGTGGAGCATGTTCACGCCGTATTTCGAGGTCTGCGACTCTGAGGGCATCTCGGCCGTGAGGATCCAGGGCTCCTGCTGCAACACTCGCTGCCTCTCTGAGCAGGAGCTGCAGCTGGTTTCCAGTATCGGTGAGAGTATTGGGCGCATATGGAAAAGGTGGCCTGGATATAATGAGGATTGTAACATGGATCATGAGTATTTTGGACTGGACGTGCCTAAAGGAATGAATTTGAACACAAAAGTGCTGTTACTAGCCGCTGCCTTCCTGTTGAATCACATGTTTTTTGAGATgagctaaatgaaaatgctcTCATCAGCTCTGAAGTGAAGTGTGAGCCCAACAATGTAGAATTATGGTGACTCATAATATGTTTCTATGACAACTGCTGGAAATGTATAGATGGTTGATGCTTTTCTGAGCTAATTGCATCTGAACTTACTGTTTGACAAATATCTAAGGCCAACATGAAAACTAACTTTTTTCTATTACATGCCTTCTAATTCATACAATTATAGCAACTAAAAGGCATTTTAGGATCATCCAAAAAATCCACCTTCAGGTCAGAGTGCACCgattttactaaataaacaaaaataactttgacGCGCCAATAAAaaccagttttgtttttaaaaccaagcatttaaatataatttttctaacAAGTTATTGTTATCTGATATTTATGGTTACTTTGCAAGTActgtactactttttttttttatttattctcaatCTGTGTGGCGTTTCTGAATATTATTTTGCCAGTCTTTACAGGGTTAAATGTTCCACGCACCCTTTTGTAATACAAAATGCTTACAAATATGCCTATATTTCTGCATGTAATAAAGATTGAGTAAATtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21083 lncRNA upstream 60934 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 124633 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 311532 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 335930 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 513144 21166088 ~ 21168887 (+) True G13983
TU21152 lncRNA downstream 29200 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 32347 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 123358 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 161636 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 164333 21851904 ~ 21852835 (+) False LOC122327294
XM_043223826.1 mRNA upstream 143 21676444 ~ 21681888 (+) True chrng
XM_043262117.1 mRNA upstream 8431 21652740 ~ 21673600 (+) True prss56
XM_043262118.1 mRNA upstream 44113 21632030 ~ 21637918 (+) True alg3
XM_043217409.1 mRNA upstream 62159 21558145 ~ 21619872 (+) True ece2a
XM_043254267.1 mRNA downstream 14520 21702091 ~ 21704894 (+) True LOC122355713
XM_043254274.1 mRNA downstream 14523 21702094 ~ 21704894 (+) False LOC122355713
XM_043224622.1 mRNA downstream 27112 21714683 ~ 21716290 (+) True ccl20a.3
XM_043219111.1 mRNA downstream 66834 21754405 ~ 21793590 (+) True camsap2b
XM_043259016.1 mRNA downstream 107117 21794688 ~ 21809332 (+) False wdr47a
TU21079 other upstream 199713 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 320323 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 320323 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 320323 21337682 ~ 21361708 (+) False G14211
TU20650 other upstream 517209 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 27784 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 173320 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 241176 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1003680 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1857535 23545106 ~ 23547974 (+) True G14831

Expression Profile