RNA id: XM_043223860.1


Basic Information

Item Value
RNA id XM_043223860.1
length 2573
RNA type mRNA
GC content 0.41
exon number 7
gene id palm1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12176228 ~ 12189936 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTGTCGTGTGCTTTGGGTTTGTGTTGACATCGTTTATACAGCCCCTCGAGTGTCCGGAGGGAGGCGTATCCAAGCGTCTCCTCTCACACTCACTCGGAGGAGGAGATGCCAGACATTGCCCTTAACACGCTCGCGGAATCACTGTCGCGCGGGAAACAAAGGCTCGGCTGCCGTGGAGTCAACAGTCGCGCGCTCCATCCTAAAGCCATGTGAGAGATCCGCTGCTGCAAAGGGACGCCAGAACGCACTGACCGTCGGGTTGAGCGCCGCTCCCCGGAAAACAGAGAGCACACGTCCCCGCCAAGAACCGTTTTTGCAACCCGAGAAAATAACCGAATTTATGCCCATCAGTAGATAGTAGTAACCCAGTCGTATTGATCGCCTGTATCGTTTACGCCTCCGAGCgggggtttgtttttttttcctgagcgGGCGCGAGAGAAACATTTGCTATCAAAAGGGAACGGTCTGACCACTGAGATGTCGGAAGCTTTGTCACAGGAAGAGAGACTTCGAGCCATTGCtgagaagagaaagagggaggctgagattgaaaacaaaagaagacaaCTTGAGGATGACCGCAGACAACTCCAGCACCTCAAGTCAAAGGCATTGAGAGAGCGGTGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAATTACAAGAGGATGAAGCCAAGACCAAACTACTGGAGCAGACCATCCTCAGACTAGAACAGGAGATTGATGAGCTTGAGACTGGAGTGCCTTTGAATAAAGGAGAAAATGCACCTGATGGTCCAGCGAAGGTTGAGAACGGCATACAGCAGCCCAGCCCGAACGCAGATCAAAATAGCAAGAAACAGATCACAGGCATCGAGGCCAAACTGCAGTGCACCAACCCCGACGTAGCCATTGAGAATGCCAGCGCAGAGCATCCCGTCACCATGGTGTTCATGGGCTACAAGAATGTAGAGGACGAGGCCGAGACCAAGAAGACGCTGGGCATAGAGGAGACAGTGAAAGCTGAATTTGTGGTCATTGAGGACGGCGAGAGCAAAGCTGGGAACGAAGGGGCCAAAGAGGACCAGGCCCCACCTAACGGCAGCACCTCCAGTCCCGACAAAGCTCAGGATGAAGCCAAGAAGGAGGAATCGAAAGAAGAAGGCAATTCGAAAGAAAAGCAGCCGTGCAAGTGCTGCACAGTCATGTGAGTGAGCAACCGCTCACCCTGAAGTTAAGACTCTGACAGAAAACTGACCCCCTGACCATAACACAACAATGAATAAGTATACCCCGTATACTTATAATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctgtcttgacatttatatatctatatatacatatattttcattatgtaaTCTTATGAAGTCCAGTATTTTGCTTGTTGAAGAACAGAAAAATGAGGACCACGACAGATTCCGCTTTagacaaaaacacagttaaaagaacaattttgtGGCCCTCAtccttattttgttttaagaaaaataagatgAACGTCTCGATATATATGAACTAGCTATTTATCTCCcatatgcatttgtgtttttaagataTTACTTTATAACTGAGAAGAAATTACTATATTGATATTACAATGTtatgcttttaatatatattttgagccttttgttttgttttttgtttttgccaaatCATCTCAGACCACTGTGAACACTGGTACATGGAGTGTCGTCTTTGTCCACAATCATACATTCTGCATTACACCACATAGTAGGCCGATATGTTTGTAAATATGATGCAATTATTTATGACTGTTCATGCTATGGTAGAATACATGTAATcacgttttattaaaataaataattactgtattaCTGCTGTAATTACCCCAGATCCCAATTATAACCACAGCAGATATCGGTTTTAACAGTACATCACTTTTTAACCAAATAACccattttaaaaccttttcaatctttttttttttttttttttacttgaatgaTAACATTGTTAGATTCAATTGtaatcaatattacatttttgaaaatttagTAACATTGCAATGCCTCATATTACACGTAGCCCATATTATCAAAAAGCATTCTTGCAGTAtgcaaaatatatctttatatcatttgaataaaaaaaagaattgtgtgAAATTGAGGGGCTTTGATGTTGATGGGGTTGCTGTTAGTTGGTATGCCCTCAATTAAGCTAGAGTTCAACATCCGTGATTCAGTGTTCAGGCAGTTGATTCACGATGAAGAATCATCCGTTTGCGTTAATTCTAAGTAAACAGTCTGgggtcaaaaaaacatttttcacattctAAGACCATGGTTTTGTAAATGTAGTTTTGCTGTCTTTCtgatatttcaatttaatgaattatttcattttgtgtaaGAAAATATGTGTTGTGGCTATCAAATAATGTCATGAGTTATAGGTGCTTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGAACaatgacaataaacaaaaaaatgtttgtttacagttA

Function

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 75103 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 557366 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 562663 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 565142 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 674643 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 147731 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 355417 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 424439 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 426059 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 433893 12623829 ~ 12624952 (+) False LOC122358236
XM_043254130.1 mRNA upstream 7312 12156094 ~ 12168917 (+) True plppr3a
XM_043256052.1 mRNA upstream 26060 12111956 ~ 12150169 (+) True grin3ba
XM_043218268.1 mRNA upstream 86303 12068261 ~ 12089926 (+) False slc7a14a
XM_043219545.1 mRNA downstream 1293 12191229 ~ 12201145 (+) True ptbp1a
XM_043255426.1 mRNA downstream 14469 12204405 ~ 12256887 (+) True efna2a
XM_043255435.1 mRNA downstream 14473 12204409 ~ 12256887 (+) False efna2a
XM_043262125.1 mRNA downstream 80951 12270887 ~ 12278067 (+) False hectd3
XM_043262126.1 mRNA downstream 80951 12270887 ~ 12278067 (+) False hectd3
XR_006252734.1 other upstream 238639 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 670499 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 676151 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 677292 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 835118 11339863 ~ 11341111 (+) False mrpl34
XR_006247874.1 other downstream 89975 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 90654 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 91436 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 433887 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 678047 12867983 ~ 12873145 (+) False rnf152

Expression Profile