RNA id: XM_043223952.1


Basic Information

Item Value
RNA id XM_043223952.1
length 2391
RNA type mRNA
GC content 0.58
exon number 7
gene id LOC122328301
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22833068 ~ 22870972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGacggagacagagacagagacagtgtgttctgtctctctcacacacacacacacacacacacgcgcgcgtgCGCGCGCGCTCTCTGGAACAGCATCTCTGATCGAGCGCGCGAGGaggagtgagcgtgtgtgtgtgcgcgcgcgtgtcgGCGTATTTGATGCCGGGGAGGTAAACACACACTCGGGCTCGAGGACACGTATGGACGCGTTCGTGTGACTTATGGACAGACGCGAGGAGGAGACGGCGAGCAGGAGACCGAGGAGGACGCAGCCGTCACACTCCAGACCTGGGTGTGTAGAGTGAAGTGGAGGGAGGCTCATGGCTTCATTATGGGGCCTGGGCCGGCTTCAGTGGCTGGTTCTGGTCCTGGCCCTGACGGCCGTCCAGTGCTCAGGCTGCCCTCCTCGCTGTGACTGCGCGGCGCAGCTCCGTTCCGTGTCCTGCCAGCGCAAGCGTCTCTCCGGCGTCCCGGAGGGCATCCCGACAGAGACCAGGCTGCTGGATCTGAGCCGGAACCGCCTGCGCTGGGTGGCCCCGGGAGATCTGGCTCCGTACCCGCGACTAGAGGAGCTGGATCTGAGCGAGAACCTGATCAGCACGCTGGAGCCCAACGCCTTCGCCAGCCTGCAGGCTCTACGGACGCTGAGACTCAGAGCCAACCAGCTCAAGCTCGTGCCCATGGGAGCCTTCGCACGGCTGGCCAACCTCACCACACTGGACCTGAGCGAGAACAAGATCGTCATCCTGCTCGACTACACCTTCCAAGATCTGCGCAGTCTTAAGAACCTGGAGGTGGGGGACAATGACCTGGTCTACATCTCTCACAAGGCTTTCTCAGGATTGATCGGTCTGGAAGATCTGACCATTGAGAGGTGCAACCTGACGTCCATATCGGGCCAGACTCTGTCTTACCTGCGTAACCTGGTCACCCTTCGCCTGCGACACCTCAGCATCTCAGCCCTTGAGGACCAGAACTTCCGCAAGCTGTCTGCGCTGAGAGGCCTGGAGGTGGACAGCTGGCCGTACCTGGAGTACATCTCACCGCTGAGCTTCCAGGGTCTTAATCTGTCCTGGCTCTTTATCACCAACACCAACATCAGTTCGGTGCCGTCAGCCTCCTTCAGGAACCTGGCCTACCTGACGGCCCTGAACCTTTCCTACAATCCCATCTCTACTCTCGAGTCCTGGGCCTTTCGAGACCTCATCAGACTGAAGGAGCTGCACATGGTCAGCACTAACCTGCTCACCGTGGAGCCTCACGCACTGGGAGGTCTGCGTCAGATTCGAGTCTTGAACCTGTCCAACAACGATCTGGTGACGCTGGAGGAGAGCTCCTTCCACTCGGTCAACAGCCTGGAGACGCTTCGAGTGGACGGGAACCCACTGTCCTGCGACTGTCGTCTGCTGTGGATCCTGCAGCGCAGACGCACCCTGAACTTCGACGGGAAGATGCCGGTGTGCTCCGGACCGCCGGAGGTGCAGGGATACCTGTTGAGCATGTTCACCGATTCCGCATTGTTCGACTACTTCACCTGCCAGAAGCCCAAGATCCGTAATCGGAAGCTGCAGCAGGTGACGGCTCACGAAGGCCAGCCGGTGTCGTTCCTGTGCCGAGCCGAAGGCGAGCCGACTCCGGCCATCATCTGGATCTCCCCGCAGAGACGGAGGATCACTTCCAAGAGCAACGGCAGGATCACAGTTCTCCCCGGCGGGACGCTGGAGATCCGATACGCGCAGGTGACGGACAGCGGCACGTACATCTGCATCGCCAGCAACGCGGGCGGAAACGACACCTCCGCCACGCTGACCGTCAAGGGCCAGCCGTCGGATTCGGCTCTCTTCGCCAACCGCTCGCTGTACGCGGTGGACTTCAACGACAGGCTCAACAGCACGCGCGTTTTCCTCAAGTTCACGCTGGATTTGACCACCATCCTGGTGTCCACGGCCATGGGCTGCATCACTTTCCTGGGCGTGGTGCTCTTCTGCTTCCTGCTGCTGTTCGTGTGGAGCCGCGGACGAGGACAGCGCAAGAACAACTTCACGGTGGAGTACTCCTTCAGGAAGACCGAGGGACCCACCACCACCGGCGGATCCGGAGGAACCCGCAAGTTCAACATGAAGATGATATGAAACAACGCAGCCAGGGGCCCCCTGGGAGAAGCATAAACGCCCAACGCTAACACACACGGTGCTGAATCGCAGAAATCATACATCGTGCACGCAGAAACCTGACCACCTTGCAGTGTTATTCATGTACAATTAAAATAGGATTCTATATTTATGAAAtggttttggtttttatattatgttttcattttgttttttatttttgctgcaggctttttgttttactttacttttttatattagtaataaaGAGAAagtctga

Function

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21556 lncRNA upstream 3523 22813266 ~ 22829545 (+) True LOC122328317
XR_006247781.1 lncRNA upstream 3576 22813415 ~ 22829492 (+) False LOC122328317
XR_006252487.1 lncRNA upstream 30595 22786721 ~ 22802473 (+) True LOC122357472
TU21543 lncRNA upstream 47055 22742427 ~ 22786013 (+) True G14578
TU21492 lncRNA upstream 56065 22776240 ~ 22777003 (+) True G14553
TU21584 lncRNA downstream 132232 23003204 ~ 23005138 (+) False LOC122324535
TU21587 lncRNA downstream 155808 23026780 ~ 23028239 (+) True G14605
TU21589 lncRNA downstream 158195 23029167 ~ 23029879 (+) True G14607
TU21593 lncRNA downstream 175661 23046633 ~ 23049972 (+) True G14611
TU21837 lncRNA downstream 287126 23158098 ~ 23179131 (+) True G14772
XM_043219140.1 mRNA upstream 48222 22780823 ~ 22784846 (+) True sf3a2
XM_043220650.1 mRNA upstream 59312 22770549 ~ 22773756 (+) True tpgs1
XM_043224502.1 mRNA upstream 75395 22752753 ~ 22757673 (+) True si:dkeyp-68b7.5
XM_043224512.1 mRNA upstream 75395 22752756 ~ 22757673 (+) False si:dkeyp-68b7.5
XM_043216715.1 mRNA upstream 81538 22730924 ~ 22751530 (+) True si:dkeyp-68b7.12
XM_043222610.1 mRNA downstream 55341 22926313 ~ 22937828 (+) True pias4b
XM_043219179.1 mRNA downstream 67815 22938787 ~ 22946858 (+) True map2k2b
XM_043264291.1 mRNA downstream 88014 22958986 ~ 22998516 (+) False tcf3a
XM_043264274.1 mRNA downstream 88015 22958987 ~ 22998516 (+) False tcf3a
XM_043264283.1 mRNA downstream 88016 22958988 ~ 22998516 (+) False tcf3a
TU21525 other upstream 137738 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 904249 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 971626 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1116781 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1350750 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 674134 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 866079 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1064949 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1212866 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 1622466 24493438 ~ 24499685 (+) True G15065

Expression Profile