RNA id: XM_043224143.1


Basic Information

Item Value
RNA id XM_043224143.1
length 4001
RNA type mRNA
GC content 0.42
exon number 17
gene id mtf2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7225090 ~ 7236113 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACCATCAAACAACTAACTTTGCTTGATGGTTATCCCACGTTACATTTACATCTATTTAATCTAAATTCTGGTACAATATTCAAtaaagctttacattttttttctcaactacATGAAAGACAAACATCTAAGACAAAAACCACACGTGTttcaaatcagattttttttaaaaagacgcaTGCTTATATGccattgacaaaaataaaacgttcTGATTgtctaaatgtcaaaataaagtgaaaaagtcACGCGGAAGTGTAATGGGACAACGAAGCGCAGAATTATGTGACGGTGTGAGTGATGTAAACATCCTCCCACTAACGCTTTTTCAAATTTGTGAGGGAAAGTGAGTCCGTGCGGAGCGCGAGCGCGTCCCACAATGCACTCGCCGCTCAGCGGGAAACCAAAATGGCGAGAGCGAATGAGCCAAATCAGCCGTTTACCGTAGTGTAAAACGCTTAATACGTTAGATTAATCTCTCAAAAGCAGCACCACCTCGATTCACAGCGGAGCGCCTGCTGACTGTTTATGGTGTAGTTCTTCGTGTTTGTGACTCATTGTAACCCGGGAAAGTGGCCGAATGAGAGACTCAGCAAGTGCAGATAACCTGGCCGCCCATCAAAAGTCAACTCCGAGTCGCCAACACAAATCACCGGTGCCCTTGTCACAATTTCCCCTGAAAGATGGGCTGACTGACACGGCCAAACTTGCCAGCAAATTTGAAGAAGGGCAGGATGTCCTGGCCCGATGGTCAGATGGCCTCTTTTACCTGGGAACTATTTCCAAGataGATAAACATAAGCATCGCTGCTTTGTAATTTTTGAAGATCAGTCTAAATCCTGGGTTCTGTGGAAGGACATTCAGACAGTTGACAGACCTCAGAGTCTCCAGGCTTACACAAACCGTAAGTCCCACATCGAGCCAGGAGACAAGAATAGGGAAGGGGACAGTGGAGGGGAAATGCTCTGTTCTATATGCCAGAATGAAAGCTCCGAGCCTCCCAATGAAATAGTTATCTGTGACAAATGTGGACAAGGATACCATCAGCTATGCCACGCTCCCATAATCGACTCCAGTGTTATTGCCTCTGATGACAAATGGCTGTGCAGACAGTGCGTGTTTGCTACAACAACAAAGAGAGGCGGTGCACTGAAAAAAGGGCCAAATGCCAAAGCCCTACAGGAAATGAAGCAGTCTTTGCCTTACGCCCTTGAAGATTTAGTGTGGGACCAGGGCCACAAGACGAACATCCAGCAGTGCTATTGCTACTGTGGAGGGCCTGGCGACTGGTATCTGAAGATGTTGCAGTGCAATAAGTGTAAACAGTGGTTTCATGAAGCCTGCATCCAATGTTTTCAGAAGCCCATGCTCTTTGGAGACAGgttctatctatttatttgttctgtttgtAATAGTGGACCAGAGTACCTCAAACGTTTGCCTCTGAGATgGGAAGATGTTGCACACCTGAGCCTTTATAACCTGAGTGTAATTCATAAAAAGAAGTACTTTGACTCAGAGCTGGAGCTAATGACTTACATCAATGAAAACTGGGACAGGCTTCAGCTTGGCGAGCTTGCAGATACCCCAAGAGCAGAACGATATGAATGCATTCTGGAAGCACTTAACAGCAACCTCAACATGTTCATGTCAggaaaagagataaaaaagaagaaacatctGTTTGGGTTACGAATTCGCTTCCCACCAGCCCAGAATTCTGAGCTCCTGTCAGGTCGAGAGCCGGAAAAAGCCTCCCATGAGATCAAAATCAAAGGCAGGAAGGCCACCAAACCTCCTCATTCATCTGGCACTGTTACTAATGGAGtgaagaaaggaaaaaggaagcatcacacacactcattagaGACGCTTGCCAAGCTGAGAAGATCAAGTGAACTTTTGTCACAGaatgaTGGGAAGTTTCCAGCTTTCGACAACAACTCACTTGACCTGATGGCTTCAAAAAGtgctaaAAGTGAGAAATCTTTGCCTTCGTCAAGTACCTCAGATGTTGAATCCATTGGTGCCACCAGCACCAGTGAAACTACCTCAACCACCCTCTCAAGGCAGTCCAGCTTGGGCAGTCCAAGTGGTCCACGCACTGGATGCTTATGGCCCACTGTCACACAGCCGCCGATCAAGAGACGCCGGGGACGTCCACGGCGAGCACTGCAGCCCCCAAATCCAGAGATTCCGCCTCCCTGCAACCCAGAGCTGCAACCCAGCAACAACGTTCCTGAGCCAAGCCCCCTCCCCTCCTGCCTCTACAGCGGCATGGACATCATGCAGGGCCTTGACCCCAACACCCAGCTCAACCACCTCAAGAGCTCCATCAGCACTTACTTCGGGGCTGCAGGACGCCTGGCCTGTGGAGAGAAGTACCGCGTGCTCGCTCGCCGTGTCACTAATGACGGCAAAGTACAGTATTTGGTTGAATGGGAAGGCGTCACTGCCTCCTGAGCTTCATATGGGTCTAATGTACTTCTTGACAAAGAATATGTCACCCATGAGGAAGGAAGAGCGGTGATTGTGCCCAAATCTGTGCAACCGACTGAGATAGTTGAGGGGCCTCAGGACTATAATGAAGAGACGTATGTGTATGTGAGCTGTCTCTGTGGAAAGTGAAACGGACTGCCTTCACATGGACTGGATTCACACATTGAAGGTGGCTGTAGTTTCAGGTTGAGGACATAATCAATTCACTACTATGTGAAAATAACCCAAGTCCTTGCTTTTTGTCTGATGTGGAGGTGCCTTAAAGGGTTGTGAAACAGATACTATATATGCTGCTGGAGacagaggattttttttttttctctcctttttcaGTTAAACATTTTCTTGTAGCTCAAATTGCCAAGAGGAGAGAGCGCTATTGTCAATGGGGCACTTTTATTCACGTTTCAACTGATTGCACATACGCTCTCACCCTGTAACTCAGTATTGTGTCATCTCAGTTTAAACAGCCTAGCTCGTGaatttgatttataaaatgaGATTATGATGTTAAACAATGGAAAATGGTTCATTCTTCTCCtgccacaaaataaaatttaaaatatgagtagcattaatatttacataatcttGGTATTTTCTGAGACATTCCACATTCACAGAAGGCTAATCGAAGggttttatgtttataaatttgtctcaattttttttccgtttaaatatatatatacatatatcttatAAGCATATGACAGCGCTGTAGCGTTAGGAGGTCTTCGTATATCCTccccttaattttttttaaataactcatggaaatttcagttttgttttttttttttttttttaaacttatttaggctaagtgctgttttgttttgtttttcaaagttTAAATCGGATgtctaatttcatttttgtgactGAGGGATAATCTTGTTTGTATACTTTCTTTTATACTATGCAACTAATTCAACAGacctgtgtatttttttttttttttttttttttttttttgcagcttcaGCTTCACATTACAATCagaaaacagcagcaatatttttgttacaattgACTCAGGCTTTTTGTGGTGCTATTTATTGCTTTCAAACAGTGTACACTAACAAATTGTCATTTCACAAGAGCGCTCAGGTTAATTTACAAATTCACTGTAAGATTTAACGGGACATCCAAatgagatttttcttttcttagctttctattttcatacatttctaaagctgtattaattttttaggtggaaaacctttttttttttgacctgaGAATGCCCTGTCCTCAATAATATTATCTAACCACTTGCAGAGGGTGGAAGTAGTATTGGTATCAGGCAAGTTTTGGACTTCAACATTAATACCTCCTGattttgatacaaaaaaatcttcagAATATTAAGCTCTTGTTATGTTGTGTATGAAGCATTATTCAGTTGGTGTACCAGTGTTAGTAAAGTTGCTTTGTATTTTCCTGGCTTTGAGCAGGCTCCTTTAGCCAAAGAATAAAGATCTAAAACCTTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11485 MTF2, PCL2; metal regulatory transcription factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14911 lncRNA upstream 14152 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 15156 7206507 ~ 7209934 (+) True G10020
TU14903 lncRNA upstream 25553 7197090 ~ 7199537 (+) True G10013
TU14902 lncRNA upstream 28690 7189655 ~ 7196400 (+) True G10012
TU14819 lncRNA upstream 124429 7099628 ~ 7100661 (+) False lrrc53
TU14967 lncRNA downstream 49565 7285678 ~ 7300079 (+) False gng12a
TU15018 lncRNA downstream 184329 7420442 ~ 7421878 (+) True G10094
TU15044 lncRNA downstream 245517 7481630 ~ 7555541 (+) True G10112
TU15033 lncRNA downstream 268509 7504622 ~ 7582245 (+) True G10108
TU15035 lncRNA downstream 268509 7504622 ~ 7582245 (+) False G10108
XM_043221812.1 mRNA upstream 18688 7203301 ~ 7206402 (+) True rpl5a
XM_043221692.1 mRNA upstream 40076 7176935 ~ 7185014 (+) True rpap2
XM_043221740.1 mRNA upstream 54975 7164705 ~ 7170115 (+) False cdc7
XM_043223526.1 mRNA downstream 826 7236939 ~ 7254571 (+) True ccdc18
XM_043223534.1 mRNA downstream 826 7236939 ~ 7254571 (+) False ccdc18
XM_043223539.1 mRNA downstream 1240 7237353 ~ 7254571 (+) False ccdc18
XM_043257663.1 mRNA downstream 21051 7257164 ~ 7268405 (+) True scinlb
XM_043257672.1 mRNA downstream 21379 7257492 ~ 7268405 (+) False scinlb
TU14783 other upstream 237971 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 532715 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 534311 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 857136 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1002571 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 269478 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 870752 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1926498 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2510481 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2675515 9911628 ~ 9916861 (+) True znf414

Expression Profile