RNA id: XM_043224154.1


Basic Information

Item Value
RNA id XM_043224154.1
length 7295
RNA type mRNA
GC content 0.52
exon number 67
gene id col11a1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9087694 ~ 9154434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTCCAACCCTCCGAAAGACTTGAGCTCTTCAGGGAACAAAccggttttctttttttttcatgagagCCCGTTTACCTTCTGTCTGAGAGTCTGCTGGGCGGAGGGACTGAGGAGTTTGTTCGAGACGAAAaccaattgattttttttcgctcatggcagtgcagaaataaataaaaataatctggaTTGCGGAAAAGGAAcgaatttgaaaataaatcacagttgAGGGCACCGGTCATGGATAAGGACAAGGAAAGGTGGTCCACGAGATGGAAAACGAAAAACTGGCTCAGGAACTCCGCTTTAAGTGCAATCTTCAGTCTGACTTTTGTCCTACAGGCGACACATGTGAGAGCAGCTGAACCCGTGGATGTGCTCAAGGTCTTAGACTTTAAAAGTTCACCAGAAGGAGTGAAGAAAACACAAGGCTTCTGCACCATCCGGAGAGGATCCAAACCAGATGTGGCCTACCGAGTGGACAAACAGGCTCAACTCAGTACTCCAACCAAGCAGCTCTTCCCAGGAGGAGTGTTCCCTCAGGATTTCTCCATCCTTATGACGATCAAACCAAAGGCGGGAGTACAGTCCTTCCTTTTATCGGTATACAACGAGCAGGGCATCCAGCAGCTGGGTGTGGAGGTGGGCCGTGCTCCGGTTTTCCTTTATGAGGATCAGCATGGGAAGCCCGCTCCTGAGGATTATCCCCTTTTCCGTGCCATCAACCTTGCAGATGGAAAGTGGCACCGCGTGGCTATTAGCGTCGAAAAGAAGACCGTCACAATGATTGTGGACTGTAAGAAGAAGATCACTAAACCACTCAGCAGAAGTGACCATTCAATCATTAACACTGATGGCATCACTGTCTTCGGGACCAGAATCCTGGACGAGGAAGTTTTTGAGGGAGACATCCAGCAGCTTCTTTTGGTGGCAGACCCTCGCGCAGCCTTGGACTACTGTGAACACTACAGCCCCGACTGTGAAACCCCCCATCAAGAGACACCACAGGCCCAGGAACCCGAGGAAGAGtacAATACTGAATACACAGATTATAATGAGTTCTATGACTACACAGAAGAAGGGACTGCCACTGAAAATCCCACTGACAACATCGGTGCAGAGACTAAGCCCAGCACTGCTGACACTGGAGATTACTATACTGATCAGGACTACGGCACTGAAAACCCTTCCGTTTCCAATACAGCCACTGAGAATCCATCTCCAAAAGAGGAAATAGTAGACGACTACATTACAGGGACAGAAGAGGTTGGATTGGATCCCACCATTGCCACCAACGAGAATGTGGATATTGTGGAGTCTAAAACCACTAACGGTGCAGAAAACCAAGACTTTAAGGAATATGACATTAACGAATATGATGCAAAAGAGATAGACCCCAGCATCTATGAAGATTCATTCTATGACTACAACACTAATGGAGCTAAACCCACCGGATCAACGTACGAGAGCGAGATTGGACCGGGCCGACCTGCTGAAACAGAGGTCACGGAGAGTAATGTTGGCGGTGGCTATGGTGGTGAAAAGGGGCAAAAAGGTGAACCTGCAGTCATTGAGCCGGGGATGCTGGTAGAGGGACCCCCAGGACCACCAGGTCCCCCTGGTCTCCCCGGTACTCCAGGCATACAAGGCTCCTCGGGCCTCCACGGAGATCCTGGTGAGAGAgGCCCTCCTGGTCGTCCTGGTTTGCCAGGCGCAGATGGAGCTCCGGGGCCCTCTGGCACCATCCTCATGTTGCCGTTCCGCGCTGGTGGAGAAGCTCACAAAGGTCCGGTGGTGACGGCACAGGAAGCTCAGGCCCAAGCCATCCTCGCCCAGGCTCGGTTGACTATGAGGGGACCACCTGGCCCAATGGGATTGACAGGACGTTCCGGCCCTGTGGGTGGTCCTGGTGCACCTGGTGCTAAAGGGGAAAGTGGAGATTCTGGCCCGCAGggACCAAGAGGGCTTCAGGGCCCTACCGGACCCTCTGGAAAGGCAGGCAAGAGGGGCCGAAATGGTGCCGACGGAGCCAGAGGAATTCCTGGAGAATCGGGAGGCAAGGGGGACCGAGGGTTTGACGGACTTCCTGGTCTTCCTGGTGAGAAAGGACACAGGGGTGAGGCAGGTCCCATCGGCCTACCAGGCCCTCCAGGAGAGGATGGACCGAGGGGTGAGGATGGTGAGATTGGACAGAGAGGAATGCCAGGAGAAGGCGGTCCGAGAGGACTGCTGGGTCCCAGAGGCTCTGCTGGGACCCCTGGACAACGTGGTCTTACTGGATTGGATGGACCACCTGGCCCTAAAGGAAATATGGGTCCTCAAGGAGAGCCTGGACCTCCTGGGCAACAGGGGAACCCCGGTCCTCATGGTCTGCCTGGTCCTCAAGGCCCGATCGGTCCACCTGGAGAGAAAGGTCCCAGTGGGAAACAGGGGCTCCATGGCCTGGCTGGGGCTGACGGGCCTCCCGGTCACCCTGGGAAAGAGGGTCCTCCCGGGGAGAAAGGAGCAGCTGGCCACTCGGGTCCCCAGGGGTCCATTGGCTATCCCGGTCCCCGGGGAGTGAAGGGTGCAGAGGGCATTCGTGGCTTGAAGGGCGGCAAAGGAGAAAAGGGAGAAGATGGTTTTCCTGGGTTCAAGGGTGACATGGGCCTCAAGGGTGATAAGGGAGAGGTTGGTGTTTTGGGCCCCAGAGGAGAAGACGGTCCGGAGGGGCCGAAAGGTAAAGCAGGTCCCACCGGAGAGTCTGGGCCCATGGGTACGGCAGGAGAGAAGggaAAACTTGGTGTTCCGGGTTTGCCCGGCTACCCAGGAAGACAGGGTCCTAAAGGCTCAACTGGTTTCGTCGGCTTCCCTGGAGCCAATGGTGAGAAGGGAGGAAGGggTATTGCCGGTAAAGCAGGTCCGCGAGGACAAAGAGGACCAACGGGTCCTCGTGGTGGAAGAGGTGCCAGAGGTCCAACAGGAAAACCTGGAGCAAAGgGAACAGCAGGAAATGATGGACCAGCTGGTGGCccaggagagagaggACTCCAAGGACCTCAGGGCCCTGTTGGATTAACAGGCCCTAAAGGACCACCTGGCCCTCCTGGAAAGGATGGATTGCCCGGTCACCCTGGACAGCGTGGAGAGACTGGTTTCCAAGGAAAGACTGGACCTCCAGGACCCGGAGGTGTTGTTGGCCCACAGGGCTCTACGGGAGAAACCGGACCTGTTGGAGAGAGAGGACATCCTGGATCACCAGGGCCCCCTGGAGAGCAAGGCCTTCCCGGAGCTGCTGGCAAAGAAGGTGGAAAGGGTGATCCAGGTCCTCAGGGGGTTTCTGGGAAACCTGGCCCGGCCGGACTGAAAGGGTTCCCAGGCCAGAGGGGGATTCCTGGCACAGCGGGTCCATCTGGTCTGAAGGGAGGCGAGGGTCCACAGGGTCCACCCGGTCCTATTGGGtcaccaggagagagaggagcagcTGGACCAGGAGGACCCATTGGTCTAACAGGACGCAATGGCCCTCAAGGACCCCCGGGACCTGCTGGAGAGAAGGGTGGTCCGGGTGAGAAAGGACCTGCTGGTCCTGCCGGTCGGGATGGCATCCAAGGTCCGGTCGGACTTCCAGGCCCAGCCGGACCTCAGGGTCCACCTGGAGAGGACGGTGACAAGgGAGAAGTTGGAGAACCAGGTCAAAAGGGAAGCAAGGGTGACAAAGGCGAACATGGTCCACCAGGTTCAGTGGGTCCTCAGGGTGTAATTGGAGCTCCAGGTCCTGCTGGAAGTGACGGTGAGTCCGGGCCCAGAGGTCAGCAGGGTATGTTTGGGCAGAAAGGAGACGAGGGGCCCCGTGGTTTCCCAGGTCTTCCTGGTCCCGTTGGACTGCAGGGTTTGCCAGGACCACCAGGTGAGAAAGGAGAGAATGGAGACGTCGGCCCAATGGGTCCACCTGGTCCTCCTGGTCCCAGAGGTCCTCAAGGTCCTAGTGGAGCGGATGGTGCTCCTGGCCCTCCTGGAGGTATCGGTGCAATGGGTGGAAATGGTGAAAAGGGTGAGACCGGTGAGGCAGGTAATCCAGGACCACCAGGAGAGCCTGGTTCAGTAGGATTCAAAGGTGAGCTTGGAGAGAAAGGAGAAGCTGGTCCTCCCGGAGCTGCAGGGCCTGCTGGTGCAAGAGGACCCCCTGGAGACGACGGTCCCAAAGGAAACCCAgGTCCTATTGGCTTCCCTGGAGATCCAGGTCCTCCTGGTGAGCCCGGAGCAGGCGGACTGGATGGCCTTCCCGGAGACAAGGGAGATGATGGAGAGGCCGGTCAGCCTGGCCCATCTGGTCCATCTGGTGAAGCTGGTCCCCCAGGACCTCCTGGAAAGCGAGGTCCTGCTGGCCCAGCTGGTACAGAAGGCAGACAAGGAGAGAAAGGTGCAAAGGGTGAGGCCGGTGCTGAAGGACCAACAGGCAAAACTGGACCCGTGGGCCCCCAGGGGCCTCCTGGAAAATCTGGAGCTGAGGGCTTACGTGGCATCCCGGGGCCTGTGGGTGAGCAGGGACTTCCTGGAGCTTCTGGCCAAGACGGTCCTCCTGGACCATTGGGTCCTCCTGGCCTTCCTGGCTTGAAAGGTGACCCTGGTACTAAGGGTGAGAAGGGTCATCCAGGTCTGATTGGTCTGATCGGTCCTCCTGGTGAGTCTGGAGAGAAGGGCGACCGAGGACTGCAGGGACCTCAGGGACTTGGTGGAGGCAAGGGTGATGCTGGTCTTGTTGGTTCTCCTGGTCCCCTCGGTCCCCCAGGCCCTCCTGGTATTCCTGGAACACAAGGACAGAAAGGATCGAAAGGGTCAAGTGGTCCTGCTGGCCAAAAGGGAGAGCCTGGCCTGATTGGACCACCAGGTCCTcctGGCCCAGCTGGTGACATCATTCAGCCCCTCCCCATCCAGACAAGTAAAAAATCTCGGAGGTCACCTGACATGCAGGATGACGAGGCAGCGGGAATGATTGATTATGGTATGGAGGGAATGGAGGATGTGTTTGGATCCCTCAACACTCTCAAGCAGGACATTGAACGCATGAAGTTCCCACTGGGAACCCAGGATAACCCAGCCAGAACCTGCAAAGACCTGCAGCTCAGCCAGCCTGACTTCCCTGATGGACATTACTGGATCGATCCAAATATGGGATGCATGGGAGATGCCTTCAAAGTGTACTGTAACTTCACTGCAGGGGGAGAAACTTGCTTTTACCCTGATAAGAAATCCTCAGGGGTTAGAATATCAAACTGGCCAAAGGAGTCCCCAGGATCTTGGTTCAGTGAATTTAAGCGTGGAAAAATTTTGTCTTATGTGGATGTTGAGGAGAGCTCAATAACCTCAGTCCAGATGACGTTCCTCAAGTTGCTCAGCTCTTCTGCCCGGCAGAACTTCACATACATATGCCATCAGTCTGTGGCCTGGTATGACGCCAAGGCTGACAACTATGACAAGGCACTACGCTTCTTAGGCTCTAATGATGAGGAAATGTCCTATGACAACAACCCCTTCATCAAGACTCTTTCAGATGGCTGCTCGctaAAGCAGGGATATTCTAAATCTGTGATGGAAATTAATACCCCTCGCATCGACCAGTTGCCTATCATCGACGTCATGTTGAATGACTTTGGGGAATCCAGTCAAAGGTTTGGCTTTGAGGTAGGCCCTGTCTGCTTCCTCGGCTAGAGGACACCCCCCTCTTACCTTTATGGCAAAGGTCAAGGAGTGTGGCCAGCCGAGAGACCCCCTGCCCGTCCCCTCCTTGcgccagaaacacacacaccagcatcCGCACTGTGCAATCGGAAATGGAATATTCATCGAACGACTGAAACCTGCAATTGGAATAAACCAGAAAGAAGACATGAACTACCTGGTGGACAATGGCGCACTTtcaggagaaggaggaggaccCATTCCTTTACCATCTCACCACTCTAGAGCCTGTAGGAACCTTTtccaaacttgtttttttttctccacttgaACTCTTAAgccttattttgttttgtcccATTCCCACCTTAATCCCAGCACCATTTACTCCTGATCCCAGTCCTTCCCCCCGAGCCCCAGTCCAATTAACTCCCAATCCCGTTCCTGTATCCATTACAGATCCTCCTCCAGGTGCTGCTCAGAGCAAGACAACCACAGTGGTGTGCTCTTGTTGTAAACACCCAAACACTAAAGGTGCTATcgaaagtgcattttttttggtaaaactgtaattattattttgtacaatACTGTTCTTTAATGATTGCCTTTAAATCTTGCATGTGCATCAAAATTGATTTGATGAAATATTGGTAACTATCAAGAGTGTTTTCTTTAGAATTTTGTTGtcgttgttgctgttgttgttttcatgttcgAAAACCAACGGTGCAACAGATTTCTTCACAAGATGTCAATCAATCAAGTGTCCCTGccaactataaaataaaacaagcatttcAAACCATCcaaatttgtaattataaagtatccattttgtaaatattgacCAATTTAAGCACTTGAAGTTTCCTTTTTTGTCCACTAATATATGGGCATGTCTGACTTAGTGAAGGATTATTGGTCTTCCACtagcttttttgttgttctcaAGTGGTAGCAGTGATGCTGTGGTAATCAGTGACTCTACAATACTAAAGAAACTTGATGAAAAGTAACTTGATGTCAGATTGATATTCTTGACACTATACCTCAATCTCTTAAAAGGCGTATCCAATTCAAAGATGTTCAACCCTGTACATACAGAGCCTTGGTTAGAAAATcaagtttatatatttgaaggcagggaattttaaaataaaaaaagactatttgTTAAACGTTTGTTTGGTTATTTTGTGAGTGATATAATTAACCCTTCTATATCTAAAGCAGACACGACTATTTTGAGGTGCTTTTCATCGATATTACAGATTCTGGACAGTATTGTATTAAAATGGATAATTGTTTACTGTTTGTATGAATCGCATCTGTGTGGTTCCCTCAGTCATGCTTTTATCTTGTGCTGTATGTGCGAAAGCTTGTTGCATtcttcatttcatatttaaggTTTCTGTGCTGAAATGTGTTCAGGTTTTGTGGTTCTGTAATACTTAAGATTTGTTtcgattgttttatttttttttttcttatgcttcCGTTGTTTTTACGGTTCTGTCTGTGTCCCTGAAAACCCTTCAAATATATGACAATAGACTCAGAACTTACACATCTGTGTAACATActtataatttatgtaaaactTGGAATAAATGATCGATTACATTTCAAGTA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15557 lncRNA upstream 29835 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 31449 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 146508 8939969 ~ 8941186 (+) True G10433
TU15539 lncRNA upstream 157621 8929504 ~ 8930073 (+) True G10431
TU15463 lncRNA upstream 207241 8879942 ~ 8880453 (+) True G10374
TU15580 lncRNA downstream 61071 9215505 ~ 9216664 (+) True G10466
TU15704 lncRNA downstream 299932 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 331743 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA downstream 331743 9486177 ~ 9510133 (+) False G10571
TU15733 lncRNA downstream 422737 9577171 ~ 9577406 (+) True G10581
XM_043217443.1 mRNA upstream 158384 8890773 ~ 8929310 (+) True vav3b
XM_043259092.1 mRNA upstream 209594 8851116 ~ 8878100 (+) False LOC122359011
XM_043259139.1 mRNA upstream 210492 8848327 ~ 8877202 (+) False LOC122359011
XM_043259083.1 mRNA upstream 210492 8851112 ~ 8877202 (+) False LOC122359011
XM_043259112.1 mRNA upstream 210492 8851405 ~ 8877202 (+) False LOC122359011
XM_043256072.1 mRNA downstream 8177 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA downstream 8177 9162611 ~ 9169785 (+) True olfm3b
XM_043254902.1 mRNA downstream 19419 9173853 ~ 9180307 (+) False tecrl2b
XM_043254892.1 mRNA downstream 20751 9175185 ~ 9180307 (+) False tecrl2b
XM_043254885.1 mRNA downstream 20776 9175210 ~ 9180307 (+) True tecrl2b
TU15202 other upstream 979917 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1505309 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2100575 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2395319 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 2396915 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 8177 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 592160 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 757194 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 757194 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1556696 10711130 ~ 10718194 (+) True G10979

Expression Profile