RNA id: XM_043224190.1



Basic Information


Item Value
RNA id XM_043224190.1
length 1160
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122328481
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23995183 ~ 23997150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AATATTAAGTCAATAACAATTTGTGTTAgctgaatttaaataatgtctCTTCCAATAACAGAAGTCCTACATTTGAGGAGAGTGTGGACGCTCTGCTGTTGTCCCTGGACTCTGTGTCTGCTCTAAACAAGGCACTATTGATGACACACAGCCTGACTGAGAACATGGCTGCAAAGATCCTCTCCATGTGTCACACATGTCCCAGTCTCCATAACATCGGTTTTCAGGTGGAGTACAGTGAGAGATACAGTGAGCTCAATGTGTGTTCATCTATCAGCCTCACCAGAGTCACAGACTCTATCTCGACAGTTGACATCCAGTTGGCCTGTGATGATAGCATGATTGAAATATCTCcatcattcatttcattcacatcACCATGTTCAGACATCCCTAAAGTGGATGGACGGGAACTCTTTGAAACTCTTGACATCCTTAAAGGTTTACAAGAAGGGTGTGAAGAGCATGAAGAGCTTGTGGGAGATTTGATGTCCACCTTGCTCTCCGTTCCGGGTCTGCAGAAGGTCAGACTCAAGATCAGCAGTCTAACGGAGAACTGGGTGAAGAGGATTCGGTCCTTAACTGAAAGCTGTCCCAGTCTTCAGGAGATCAGATATGAATGCACAGAAAGTGGAGGCTTGTTATTAGAGGAGGTCGAGAGGATTCTTCAGAGCTCTCAGATGGATTCAGATTGTAGGATAATTATTACAGGGATGAAGCACAGTAAAGCCATGGATGGGCGGACTGAAATTATGATGGACACATCCAGATCATCATCAGCCTGTGATGAGAAAGTGAAGGTCACTTTCTGCAGGAACTCTCTCACAAGACTATTTACAATAGATGACATTGAGACAGAAGATACCAATGAGGATGAGCCtgaaatgtataaatcatagagaaaaatgaaaaaatatagtCTCTAATCTAAATTTCCAAAGCACAACATCGCTAACAATGTTCAGATCAAACATAATGCACCCGGTAATAATGTACCTTTTTGATGCTGATAATATaggatttttttgaaaacatatgATGAGATATTTCTTTATAACTCTAAATTGTCTATATAACATACACACAAGtgtcatttttgcaattttgcagTCACCCAAACACACAGAATGACAAAACAAAGACCTCTGGTATATAATCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006247802.1 lncRNA upstream 62 23994510 ~ 23995121 (+) True LOC122328489
XR_006247803.1 lncRNA upstream 672 23993475 ~ 23994511 (+) True LOC122328496
XR_006247798.1 lncRNA upstream 8980 23985758 ~ 23986203 (+) True LOC122328475
TU22230 lncRNA upstream 56167 23938789 ~ 23939016 (+) False LOC122323670
TU22227 lncRNA upstream 67570 23927294 ~ 23927613 (+) True G14989
TU22243 lncRNA downstream 12375 24009525 ~ 24023608 (+) True G14996
TU22263 lncRNA downstream 50650 24047800 ~ 24048342 (+) False LOC122327416
TU22264 lncRNA downstream 64734 24061884 ~ 24062193 (+) False LOC122327425
TU22285 lncRNA downstream 144090 24141240 ~ 24141921 (+) True G15026
TU22291 lncRNA downstream 148984 24146134 ~ 24147389 (+) True G15029
XM_043217689.1 mRNA upstream 56230 23935921 ~ 23938953 (+) False LOC122323670
XM_043217662.1 mRNA upstream 63294 23929631 ~ 23931889 (+) True LOC122323657
XM_043217674.1 mRNA upstream 69552 23920231 ~ 23925631 (+) True LOC122323665
XM_043224868.1 mRNA upstream 208928 23783724 ~ 23786255 (+) True hes6
XM_043224831.1 mRNA upstream 220000 23772880 ~ 23775183 (+) True lpar5a
XM_043218841.1 mRNA downstream 31854 24029004 ~ 24032203 (+) True LOC122324443
XM_043222775.1 mRNA downstream 48535 24045685 ~ 24048465 (+) True LOC122327416
XM_043222786.1 mRNA downstream 62262 24059412 ~ 24062202 (+) True LOC122327425
XM_043222800.1 mRNA downstream 74059 24071209 ~ 24073204 (+) True LOC122327432
XM_043219721.1 mRNA downstream 82006 24079156 ~ 24081504 (+) True LOC122324938
XR_006247041.1 other upstream 56240 23935921 ~ 23938943 (+) True LOC122323670
unassigned_transcript_256 other upstream 258061 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 447209 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1299853 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 2066364 21928747 ~ 21928819 (+) True trnam-cau_1
TU22269 other downstream 86688 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 496288 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1044279 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 1044833 25041983 ~ 25042065 (+) True trnal-uaa_1
unassigned_transcript_260 other downstream 1045387 25042537 ~ 25042619 (+) True trnal-uaa_2

Expression Profile