RNA id: XR_006247815.1


Basic Information

Item Value
RNA id XR_006247815.1
length 2763
RNA type transcript
GC content 0.47
exon number 9
gene id crlf1a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20416203 ~ 20429348 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGAACTGTGTGGGAAGAAGACATGGGAGGAGCTTGCAAAGTATAAACTTGGACGTTTCCAAGCAGTGGAGAGCCTCAGCACGGTAAACGATGCCAAAAGTAAATGAAGAGGATGAATGCACCGTCGCATTAACAGAACATTTGGCggatattttttaaagttcagTCTTCTGGAACATCTGCGAGACGCCAGCAGCCCAGGAACTGACGCTGGGATCAACTGTTCGGGTGCACTGGAGCTGGACTCGGTGTGGCATGCGTGGATCAAATATTCCTGCATAGTCCAAATACACTCTCTTgaactaaaagaaagaaagcgaaCTTATATCGTAAGATGATCtgcttattgtttttgttccacTGTGCTGCCGGCGTGTTGTCGTCTTCAACCCAGGTGGCTACAATCTACCCTCAAGACCCGGCCCTTCCAATCGGCTCCAGCCTGACAGCCACATGCTCAGTGAATCCAGACCACGGCGTTCACGCAGGCTCTCTCTACTGGACGCTGAACGGAAAACGTCTTCCCAGCAGCACCTACAGCATTCTGAGCCCCACCGTGCTCAGCGTCACCCTCCCGCGGCTCTCTGGGTCCCGCCAGCGCTCCGGAGACAACCTTGTGTGCCATAACAGCGGGGGTCATGTGCTGGCCGGCTCCTGCATCTATGTTGGCATGCCTCCTGAGAAACCTGTGAATCTTACCTGCTGGTCCAGGAACACTAAAGACCTCACCTGTAGATGGGCCCCTGGGGGCCAGGGGGAAACCTTCATCAAGACAAAATACACACTTAAATATAAGCTCAGGTGGTACGGACGAGAAAAGGAGTGTGAGGACTATAGCACGGGAGATCCATATACATGCTACATCCCCCGCGACCTCGCCCTCTTCACGCCCTACGAGATTTGGGTGGAGGCCTCCAACCAACTCGGAACCGCAACATCTGACGTCATCTACTTGGATATCTTAGACGTGGTGACGACAGACCCTCCGACTGATGTGACCGTGAGCCGAGTGGGCGACCTGGAGGACCAGCTGACTGTGCGCTGGGGGACACCGCCTGCACTAAAAGACTTCCTCTTCCAGGCCAAATACCAGATCAGATACAGACTGGAGGAAAGCAGCGACTGGAAGGTGGTGGATGATGTTGGGAACCAGACTTCCTGCAGGCTCGCAGGGTTGCGGCCAGGCACGGTGTATTTCGTGCAGGTGCGCTGTAATCCGGTTGGGATTCTGGGATCGAGGAAAGCAGGCATTTGGAGTGACTGGAGTCACCCAACTGCAGCCTCGACACCACACAGTGAGCGGCTGCTGACAGGGTCGTGTGACTCGAAGGTGGGGCAGCAGAACTCCACGTTGCGGCGGGATTTGAAGCAGTTCTTTGGCTGGGTGCGCAAGCACGCCTACGGTTGCAGCGGTATGAGTATCAAACTTTACGATCAGTGGCGGGTCTGGCTGCAGAAATCTCACAAAACCCGCAACCAGGTAGCTTCGGTTTCTTCAACTGTTATGCCAGGAATATTTGCTCTCATAACACCGCGAGGCTGGATCCAAGCCCTTGAGTTATTGGAGTTGCCCGGGTTAATTGAATTAAAGCGCTTCTGATGTTATTGTACTGAGTTTCCTGTGTTTTGCTCGGTAACCACAGAAGTAAATAACATGAGGCGACTCATATGATTTCAGGTTCTTCAAGGAGATAAATCATAGCACGTCGCTCCTGGCAGGCAGAACATTTAACAACAACAGCACACTGTGGAAGAATTCACATTTTCCAGACTGCTGCTTGGCTCAGTGCAAAGTACAGCTGGACTCAAAACAGGATGTTCAAACAACAAAAGGTGACGGGCATTTGGTCCCTGGGACACAGATTCGATTGTGCAGTTAAAATGCCTTATTATACAGGAAAACAAACTGTCTTTGATAATAGCCACCGAGATCACGTGGACTATATCCTCGCAACTCGCTGTCTGCGGAGAGTTCTTGATCGTGTCGGGGAGCATTTAATTAAAGGTCATAATTTGCACATTTACTGATGACTATGCCCGAGCCATGCTTAGCCGACGTGACACATGGTCTGTATGTGGACATGGTCTATATCGCTAACTTTAGCTGACCTGTATGTTAAAGAGGTTCCTCGTGGACAAATGGAAAACGTCTGAACGTTTTTTCAGCCAGCGTTTTGTGTAACTTCAAGAACAACTGGAATAATATTAAGACCATCCAGTTCTACCAAAGGTACCTTTCATGAATGTTTGAGTGACTTCAGCAGTTTACCTAAAAACCTGACTGGCATACCTCACAGAACATCTTGCCTCTTTTTAGTCTCCTGTTTATGTAAGTAATAATGCTGAACATATCAATACATAGAAAAAAGTCCCACTGCAGTCGTAAAGGAGGACCTACAGATGTACGCTATATTCCGGATCAACACTACGACAAAGTTAACATGTTGGAACCCCAGAGTGGACTCAGAAAAATGGCCTTTTAAAGTACGGAGAGGAAGATTTGGCCAACTAATGTTGTTTctcatgtttatatatgtggTGCAGTTACAAAACTGTAACTGTGTTTGTAGCATTGAActgtttgaaaataattttatgtattgagacattttactgcttttatttttgtactgaatTGTATCcgcatatttaaatttaaagttatgTTTTGACTCTTAAGTTATGTGTAGGtagattatattatttttgactgAATTGTTAAACCCTAATATGTTCATAAAATACttctttaagaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20410 lncRNA upstream 94815 20317181 ~ 20321388 (+) True G13821
TU20420 lncRNA upstream 101222 20312046 ~ 20314981 (+) True G13829
TU20323 lncRNA upstream 800148 19613459 ~ 19616055 (+) True G13768
TU20325 lncRNA upstream 803298 19612269 ~ 19612905 (+) True G13769
TU20294 lncRNA upstream 875225 19538570 ~ 19540978 (+) True G13748
TU20449 lncRNA downstream 34393 20463738 ~ 20463959 (+) True G13857
TU20467 lncRNA downstream 36182 20465527 ~ 20465846 (+) True G13874
TU20443 lncRNA downstream 48618 20477963 ~ 20499950 (+) True G13851
TU20476 lncRNA downstream 51672 20481017 ~ 20503339 (+) True G13880
TU20480 lncRNA downstream 57144 20486489 ~ 20486870 (+) True G13883
XM_043223947.1 mRNA upstream 112429 20294585 ~ 20303774 (+) True acvr1l
XM_043220669.1 mRNA upstream 670308 19644610 ~ 19745895 (+) True epha4b
XM_043218497.1 mRNA upstream 785073 19629741 ~ 19631130 (+) True LOC122324221
XM_043256383.1 mRNA upstream 790865 19622041 ~ 19625338 (+) True LOC122357116
XM_043256351.1 mRNA upstream 790865 19622041 ~ 19625338 (+) False LOC122357116
XM_043220868.1 mRNA downstream 4124 20433469 ~ 20435422 (+) True odf3l2a
XM_043221036.1 mRNA downstream 37985 20467330 ~ 20473524 (+) True gbp2
XM_043221096.1 mRNA downstream 63829 20493174 ~ 20508391 (+) True LOC122326305
XM_043221087.1 mRNA downstream 63829 20493174 ~ 20495541 (+) False LOC122326305
XM_043258251.1 mRNA downstream 90564 20519909 ~ 20529006 (+) False vcpip1
TU19377 other upstream 2599439 17784179 ~ 17816764 (+) True G13137
XR_006247303.1 other upstream 2633839 17779339 ~ 17782364 (+) False LOC122325453
TU19349 other upstream 2808111 17607252 ~ 17608092 (+) True G13111
TU19352 other upstream 2848287 17566841 ~ 17567916 (+) True G13114
XR_006252905.1 other upstream 3048342 17362245 ~ 17367861 (+) False sppl2
XR_006247459.1 other downstream 37923 20467268 ~ 20472616 (+) False gbp2
TU20479 other downstream 52319 20481664 ~ 20485218 (+) True G13882
TU20478 other downstream 64097 20493442 ~ 20504223 (+) False LOC122326305
TU20649 other downstream 734597 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 734952 21164297 ~ 21164822 (+) False G13998

Expression Profile