RNA id: XM_043224544.1


Basic Information

Item Value
RNA id XM_043224544.1
length 4940
RNA type mRNA
GC content 0.46
exon number 7
gene id plppr4a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9523028 ~ 9539523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAGCCGTTTGACAGTAATGATAGCGTAAAGAAGCGTGAACGCCCCCCACCTCCCTCACGCGCacgtgcgcgcgcgcgctcgctTCTGGTGAAAATGGGTTTTTAGCACACCTCTGACGTCATCCGGTCAGCATATTGCCTCTGCTCAGAAGGTTGAAGGTTGGCTTGAAACATTAATCGGCGTTGGACATCGCTAACGTCTCCAACGGCGCGTCCTCGGGGGATGGTGATTGTGTTGTCATGGTTTCAGTCATGATGTCGCCAGGTTTGATACAGCGTCTTTCCCTGTCTCCGTATCCGCAGTAAAAGCGCACTTGGGGATGGAGAAAGCGACAGCCTAAAGGAGCGCAATTGCCGCACACGGGGAGAAATTACACCAGCTGGGCTTCAAGCGTTCCTCTCTCCGCGCACCGTTTTTTTAAAGGGACGTACCGTTTATCATGTCCGCGAAGGAAAGACTCAAAGGCAAGATGACCAAAGACAGCGTTACCTTGCTGCCCTGCTTCTATTTCGTGGAGCTCCCAATTCTGGTGTCCTCCGTGGTCAGCTTATACTTCTTGGAGCTGACAGATATTTTCAAGCCAGTGCGTTCAGGCTACAGCTGCAATGACCGCAGTCTCAGCATGCCTTACATTGAGCCCACAAAGGAGGTCATCCCCTTCCTCATGCTCTTCAGTCTGGCTTTCGCCGGGCCAGCGGTGACGATTATGATTGGGGAAGGGATCCTGTACTGCTGCTTGGCCAGAAGAAACATCGCCATCAAAACAGAGGCTAACATAAACGCTGCCGGCTGCAATTTCAATTCTTACATCCGACGAGCTGTGAGGTTTGTGGGGGTCCATGTGTTTGGCTTGTGCATCACCGCACTCATCACAGATATTATCCAGTTGGCCACAGGATACCATGCTCCCTACTTCCTCACTGTGTGCAAGCCCAACTACACCAGCCTCAACACTTCCTGTGATGAAAACTCTTTCATTGTGGATGACATCTGCTCTGGGCCTGATCCAGCAGCAATCAACGCTGGCAGGAAGTCCTTCCCATCTCAGCACGCCACTCTGGCAGCTTTTGCGGCTGTGTACATCTCCATGTACTTTAATGCCACTCTGACTGACTCATCAAAGCTGCTGAAGCCACTCCTGGTGTTTTCCTTCATCATCTGCGGCATTATCTGTGGCCTGACTCGCATAATTCAGTTCAAGAACCATGCCGTGGATGTCTACTGTGGCTTTCTTATCGGAGGGGGCATAGCCGTCTACCTGGGTCTGTATGCAGTTGGAAACTTTAAACCTAGTGAAGACACATCTCTAAAGATACATGTACATCCTCCTCTCCGGCAACCACAGCCACCGCAACCTCCACCACAACCCCAGCCAGTGGTGCCTCCACCTGCTATGCGGGAGCCTCTGAGACCTCTACCAAACCTGAACACAGATCCACCACGCTTACTGCCACCTAAGAGCCTGAGCATGCGGGAACGTCCCACCTCAGCTCGTTCTGAGAGCATCCTTCTACGTGGCCCGTCCCACAGAGAGAACATGTCCAGTTTGAAAAGGGCAAGCACAGAGGTAGAGTGCATTACGCCTCCTAGTCCCCTCTGCAAGGAGAGCTTTGTGACATTCAGTAACACTCTGCCCCGCGTGCACTCAACTGGAGTCGAAGAACCGGTGCCTCGCCGCCATGCTGCTATCCATGCCTCCATGGACTCCACACGCTCCAAGCAGCTGCTCTCACAATGGAAGACCAAGAATGAGAACCGCAAGCTGTCTCTGCAGGTGATGGAGGCTGAGGCTGGACAACTGTCTCCCCAGCGAAACATGGAGCTCCGCTGCAGCTCTGAACCCTCAGCCATGGGCTTAGATGGTGAGCTCCGTGGTGGGCCTCCCGGGCAGTACATGAAGCTAGCCGCTAGTGCTGTGCCATTAGCCAATCATAATAGCTCTGGTGGTCTAACTGGTGGAGCCAGGGTATCGATCCAGTCACGACCAGGATCATCCCAACTGGTGCACATTCCTGAAGAAACCCAAGAGAATGTAAGCTTCTCACCTCACGAGGATGGTGGGGAGCTGAATGACGGTGGGGGAGGGGTTGGGAATGCACGGTCGAAATGGTTGAAGGTGGCAGAGAAGAGCACCGCCTGTCGGACTAACAGCCAGCCACGAATCATGCAGGTCATCGCAATGTCTAAGCAGCAGGGCATGTTGCACGGCAGTCCTAAAAGTGAGGGGAGCACCGTGAGTTGTACCGGATCCATCCGTTACAAAGCCCTCATGGATCAGGAACCCAACTCAGGCATCATTCGAGTGGAAGCCCACCCTGAGAACAAGCCTGTGGTTAAACCACCATCTACAGATGGCAGCGGGTCCTGGAGGTGGAAACCGCAGGAGCGGGTCAGCATCAGGCAGTCCCTTGAGCTCAACGACCTGAACCGGGACTCCGAGAGCTGTGAGTCATTGAAAGATGGCTATGGCTCCATCGATGGCAATCGGAGCCTACCTGACATGAGCAACCCACATCATCCCCATTTccaccatcaccaccatcaaCAGAGTATCACCACCATCCGAGTCACACCAGTGGAAGCCAGCAGTGAAGCCACGTCAGAAACTCTCTCCACCACCTCCAGTCGAGACTCCACACTACGCAGGAAAGGCAACATCATCCTGCTGCCCGACAGAGGACCTAGTCCTGATAATGCCAGGAACCTGCCTCACTTTTTCAAACCCTCCCCTACACCTCCCCCCATTTTGACTTTCAAGGAGTAAAAGAACCCTCTTTCCTTACCAATCCTCTAAGAGTTGCCTTGCTCTCTgaactctgaagactggaggctCTGTTAGGGGACTGCGTAGAGCCAGTGATTATGGACATATGTACATTCCCTGACCGTTAGACACAACTGCACTCTCCAGAACACGTAAGACAACATTGTGCATTTTCAATCTACATTCTGTAGGCCTCGTTACTATAACATAAgcacaaaatgtgaaatttggGGCTGTTTGGTAAATGTGATTGTTTGAATCTCATTTGGATTAGCTTTGTTATCGAATCCATTGTCTTATAAGAATTGTCTGTTGTCTCATGGCAACATGGgtgcttttaaaaactttgtaaatttatatatattttctcaatataaatatttgtatgtaaacTGGACCATTAAATCACATCTTTTCGTGCTTAAGGAGAAAAAATGGTTTCCACTatgttgcttttaaatatttcagctgGGCTTTCAGTCAGACTCATAGCTTTTAGACAGATAGGAGAATGTTATTGTGAAGTTTACAGAGGGTTTTAGCAACAATGTATTAACCAAATGGATGCTTTGTTTAGGGGGCTTGTTTAACCATATGCACTGTGTGTTTTAGTGACCATGAATGAGctattttcattcaaaaagcTGAAAGCGCTCTTTGCTGGCATAGAGACAATAAATTTATAGAGACTCAGCCTTTGGCATTGTAATGCAGAGAACAATACATTCTTCAAACATTAATGTCATATTGCCTTTGTGTAATATAGAACTTTTATGTGGTTCCATAGGCCAGTGAGCACTACTCCTCTCatatatattgatttgcaaGCTCTCATATTTTGTAGTGTGCTTGAGCACAattataattgtgttttatggCCCATTCCTATATGTTTACAGTGATGTATTGTACATCATTTTCTTAGTTGTCCCCCTATTTTGCCTGGCAGGATGGGGTTATATAGCTACTGGGGTGCGTTGtcctctttatttttaagagtgtgggCATAAACAAATGACTCATACTTCACTGCACATTGCAGAGAAGCATACACAGTATGAGAGCAATAGGAGGCCCCCAAAGGTACCAGCGGGAACTCATTGCTTATTTTTGTAAACGtctaaaaaatactaataatcaTATTCATAGAGTGCCTCAAAAAGTATTATATGCCTATTAGCTAGTGATAACTTAGCTCCATTTTGCAGTAACTGTACAAAAAACGTTGCTGCTGCAATGATTACGGTGCAGAATTGACAGATGTTCACTGACTTTGCTTTAAATATCCATTGTCTGTGCCATCAAATGGCACTGAAGAATGAGCACAGTCACTGCATAATGACAAGTGCTGCATAAATTaagaagttttaaataaaaaatacacaaatagaCAATGTTAAGATTCGTCCTGTGTGGCGTGTATATTTCTACACAGTTCTAaactgtgtatttgtatttctaGCTCATTGTTTACATCCTTGTTAGGACcatattgtaatatatacataaatattgcCAAATAAGAATGTATGTTGAACAAAGTGTCAGATACATGTAGTTAATTCATGTACAGTGTCATTTATATgatgttgggttttttttttttaattgaacttaGATTTCATtgatatatatatgcatattttgatgTCTGTTTTAAAAGAGTGACTCCGAAccaacacattttaaagttttatatatgCTTGTACAGTATAATTGTACCCCACATTATGGCTTTAACCTGTCCTTACATATGCATGGTGACTTAATACTGTATGTACTGTAACTAAAggatttgttttgcttttcttttgtaaatgatGCCTTTAATAGTGATGGCTGGTCCCTTGATTTATACTCTTATTTCATTCTGCGGAATCAACCGAATAATCATTCAAACTTTTTACCCCTGTAAATAGGTATTTGTAACTTTGCCAGCAAACTGTTGAAACGTAAGAGAGATCAATGGATTATTATTTGAGTGTCATAGAGACACTTGCTCTATTAGTGCTCTAAACCAGATATGGTGCATCAGAGATATGGCTTTTCGGTTGAACCTGTTGACGGTTATTTGAAAGTTTCGCCTTGTGGGGTTTTGTTTAGCGATGTATTTTGATTGAGGATGATATGTcttaatatatattgaaataaatgtttggtatCACAgccaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15720 lncRNA upstream 12895 9486177 ~ 9510133 (+) False G10571
TU15704 lncRNA upstream 68283 9454366 ~ 9454745 (+) True G10557
TU15580 lncRNA upstream 306364 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 465169 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 466783 9055723 ~ 9056245 (+) True G10445
TU15733 lncRNA downstream 37648 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 62843 9602366 ~ 9603843 (+) True G10604
TU15857 lncRNA downstream 286092 9825615 ~ 9826220 (+) True G10674
TU15953 lncRNA downstream 449620 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 453261 9992784 ~ 9993395 (+) True G10749
XM_043218021.1 mRNA upstream 189701 9321702 ~ 9333327 (+) True ptbp2b
XM_043218030.1 mRNA upstream 189701 9321702 ~ 9333327 (+) False ptbp2b
XM_043219524.1 mRNA upstream 237356 9281355 ~ 9285672 (+) True rwdd3
XM_043219534.1 mRNA upstream 237356 9281355 ~ 9285672 (+) False rwdd3
XM_043219505.1 mRNA upstream 241734 9277763 ~ 9281294 (+) False LOC122324815
XM_043219866.1 mRNA downstream 14708 9554231 ~ 9562237 (+) True palmda
XM_043219859.1 mRNA downstream 14708 9554231 ~ 9559890 (+) False palmda
XM_043224901.1 mRNA downstream 23708 9563231 ~ 9570989 (+) False si:ch211-153l6.6
XM_043224910.1 mRNA downstream 23708 9563231 ~ 9570989 (+) False si:ch211-153l6.6
XM_043224881.1 mRNA downstream 23708 9563231 ~ 9570989 (+) False si:ch211-153l6.6
XR_006252402.1 other upstream 351113 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1415251 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1940643 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2535909 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2830653 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 207071 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 372105 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 372105 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1171607 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1700603 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile