RNA id: XM_043224637.1


Basic Information

Item Value
RNA id XM_043224637.1
length 2216
RNA type mRNA
GC content 0.43
exon number 4
gene id klf6b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23698257 ~ 23702264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTCCGCTGGTGACGTCACTCAACGTGTTTCGCTTGTTTTGAAACTTGGAAAGTTTGCAGCGCTTCTGTGCAGCCGAGCGTCCGCTAAAGACAAACAAACGGCCGCCTTACCTCCGCGCATGAAGACACGGCGGGAAAGCGCCTTCTCCAGGACCTTCTTCCAGCTGGGTTTGACAGGTCTGCGCGTGGGAGGAATATGGATGTTATTCCCATGTGTAGTATTTTCCAGGAGCTGCAGAGTGTCCTTGACACGGGATACCTTTCCGCATTACCGTCTCTAGAGGAGTACTGGCAACAGACCTGTCTGGAGCTTGAACGCTATCTGCAGAATGAGCCCTACGTCTCCGCAGCTGATCTGAGATCAGTATGCGAGTCTGACGATCTCTGGAATCAGTTTCTGCGCTGTTGTGGGACCGAACCGAACTCATCCTCTCCGGGAGCTTCCGTCCCTATACAGGACGGGACCGCTGTGGCTTCCGATGCGTCATTCGGCAGCTGCAAGAAGATCATGGAGTCTGCCGATGTGCTCGCAGGCCCGCTGGATCACAGCGTGTCTGAGCGGgagcactcacacacacccccGACGCCGCCCTCCTCGCCCTCACTCCCTCTGATGGGGGTTAAAGAAGACGCAGAAGGGGCGAGAGGGGATGAGGGGTCACCTGAAGGACGAAGGAGAGCTCATCGGTGCTACTTCGACGGCTGCAGGAAGGTGTACACCAAGAGCTCTCATCTGAAAGCACACCAGCGCACACACACCGGTGAGAAGCCGTACAGGTGTTCATGGGAGGGCTGTGAGTGGCGCTTCGCTCGAAGTGATGAACTGACGAGGCACTTCAGAAAACACACCGGAGCCAAACCATTCAAATGCAGCCACTgcgacaggtgTTTCTCTCGTTCTGATCATCTGGCCTTGCACATGAAGCGACACATCTGAACGCAAACCCCCGAAGGCCTGCACAGAATCCCAAAGACCTGCCACAGCTGGTTTTGTATATTCGCCGAATGTCAGTGTTGCAGATTTTGCACCTTCTTGCTAAAAATATGGTTTCACCACATGTAATAgcgtttttttttgccatgctGGTGACATTTGACTTGTTCGGTTCAAGTCTTCACAAAGTTACAAAGGCAATGAAAATGCAGAAACTCTGGTACTAAATGTAAGTTCGCATATTTGCAGGCTTTAGAAATTACAAtgaatatgtatgtaaaaatcaaatcaaatcaaaaaaaaaatctctcggCTTTATTGCACAGCTAACATGTTTATATACACGGAGCAGATGTGTCCATGTTTATAATGTAgctttataaaaacacacaatataagCTAAGcgtttattgctttttattacgctctcaaattaaaaaaataataacttttgtGAATGTGCTAATATGTACCTATAATGTACTAATATGTTGCATTTAGGAGTGAATAAGGTAATAAATGACCTGCTTCATTTAGCATTTACAGGTACATTAGTCATACCGATATTACTTTTAACCAATAAATTTAGTGCCTTAAAATGGTTCTCTAAGAGTCAATTATGAGCTATTCATCAAGAgatcaaatactgtatattttgtgtCAGAAGGACTGGAATGACTGAACTGTTATTGAATAATTATCAGGAGCTGGGTTTGCTACTGTGTAGTATGCtataattttgaatttgaaaaatgcATCAGGATATTTCACTGGTTTTCCGAGCGCAGACTGACATCGTGTTGGCTCAGATAAAGCGCTAGCATTTGTTGTCCAGATGTTTAAAGTCCTGAAGACGTTAGAGAGACGAGGATGTTCACTCAGGGACTGATCATATGAAAGCTTTTAAAGTGTAACTGGAATTTGCAGTATCTTTGGgggaattttaaaatgcactccAATATTATCACtttatgtgcatgcatataaagatttttttcaatgaGGTGAACTGTACAATGTTACATGAATTTTTTCAAGAaccaaaatctaaatatttcgTTTTACTTGTACGTCACAATCATTTGTAAGCTTTCAAATCGTTTTGTCTAAAGAGACTAATGCAAatttttgttgtactttttttttttttattaaaattggtactttttgtttgtgttcttttatttttgtagaaaagCTGATCTTTATGTAAAAGCAACGGTatgttgtaaaaatgtaattatctttgtgaatgcattttataccacaaaaataaatgat

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21994 lncRNA upstream 6397 23690422 ~ 23691860 (+) True G14841
TU22015 lncRNA upstream 14859 23668563 ~ 23683398 (+) True G14850
TU22023 lncRNA upstream 14859 23669790 ~ 23683398 (+) False G14850
TU22004 lncRNA upstream 54707 23643012 ~ 23643550 (+) False LOC122355031
XR_006252160.1 lncRNA upstream 54732 23642463 ~ 23643525 (+) True LOC122355031
TU22034 lncRNA downstream 17378 23719642 ~ 23740497 (+) False G14859
TU22036 lncRNA downstream 17378 23719642 ~ 23762825 (+) True G14859
TU22037 lncRNA downstream 20002 23722266 ~ 23722747 (+) True G14860
TU22056 lncRNA downstream 42607 23744871 ~ 23746553 (+) True G14872
TU22074 lncRNA downstream 74839 23777103 ~ 23780120 (+) True G14889
XM_043253002.1 mRNA upstream 60827 23634222 ~ 23637430 (+) True LOC122354999
XM_043252978.1 mRNA upstream 67884 23625007 ~ 23630373 (+) True LOC122354760
XM_043252994.1 mRNA upstream 73391 23584220 ~ 23624866 (+) False mbnl1
XM_043221844.1 mRNA downstream 1237 23703501 ~ 23715237 (+) True pitrm1
XM_043255742.1 mRNA downstream 63694 23765958 ~ 23770492 (+) False LOC122356725
XM_043255751.1 mRNA downstream 64107 23766371 ~ 23770492 (+) True LOC122356725
XM_043224831.1 mRNA downstream 70616 23772880 ~ 23775183 (+) True lpar5a
XM_043224868.1 mRNA downstream 81460 23783724 ~ 23786255 (+) True hes6
TU21973 other upstream 150283 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1002927 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1769438 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1836815 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1981970 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 34787 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 233657 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 381574 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 791174 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1339165 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile