RNA id: XM_043224682.1


Basic Information

Item Value
RNA id XM_043224682.1
length 3052
RNA type mRNA
GC content 0.40
exon number 3
gene id ptx3b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17025183 ~ 17029802 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTTGAGTACATCACATATGCTGCCCACCTCCAACAAAGTATTACTCACGCTGTGACAGCCCTGctctgtgttgtgtttaaaAGAGCTTGCTCAGCCTCATGTACGTTCAGTGGGCTGACACATGAGGGACGGCGACTGTGTAACAACACAGGAACAACCACAAGGCATCTTAGTGGCTGTGGAACATCTGATTTACTTCAAAATAATCTGATTACATGCTGGGGCAGACTAACATACACACCAGCATTAACATCAGAATGTATGTGCCCGGGGCCATGCTGGCCCTCTGCCTGCCCTGCTTTTTGAGTGGGAATGTGTTTGGTTATGAATATGGAGAGGATTACTCTGATTCCTACTATAATGAAATCTCCAATGGTGAACGTCTGCAAAgagctacACAAATTCCCTGTCCGCCTCAGGACCTCTCACGCTGGGACAAACTTTTCATCATGTTGGAGGACTCTCAAATGAAGCACAACATGCTTATGCAGCAGAATGAAGACATGGTAAAGGCAGAGATGGAATCTGTACGGAAGGAGCTCCATAAGcttaacaacaacaaagcatGCGTCCAAGCCTCAGAAAACACCTGTAAATGTATAAGTGAACAGATGAACCGAAATCTGAACCAAGCCATGGAGCAGCTCAGAGAAGCAGCAGATACGTATCAAGCCCAAAACAACGAAACACTGCAGCAGCTCATTCAGTTCAGCAGGAACCAGGCCACCCGTCTCACCAAACTGGATCGCAGCTCACTGCTGGGGGCCGGTCTGGGGCAAGTGGCCATGAAGTCCTTCTCCACTTATCCAAAAGAACAAGAAGCAAGCAATGCAGATGCAGGGAAGCTGGAGAGAGCACTTATGGCTACTGTTGCGGATCTCCAAAGGGTACATGCCCAGCTGGCCTTTTTCCAACGGGCAACGGCACACCGCTTTCTGCCCTCAGgctgTGAAATGGCTTTATTATTCCCAATGCGCTCCAAGCACATCTTCGCAGAGGTAACACCCTCCATGTCCATGTTCCTAAACTCGTTCACCATCTGTCTGTGGGCCAAAGTGACTCAGTCGCTAAATAAAACAGTGCTTTTCTCTTACGGAACCAAGAAAAACCCTCAAGAGCTCCAGCTTCTTTTGGCAAGACGCTCGGTGCTCCTCACAGTGGGTGGTGAGACCCATCTAGTGGAAGCTCACAGCGTAGTAGCAGATGGACAGTGGGGACACTTCTGTGCAGCTTGGAGCTCAGAGGAGGGGCTGGCCGCTTTATGGGTGAATGGAGAGAATGTTGCCAGAGTGCACGGAGTAGCCGAAGACTACGTATTGCCCAGTAATGGGTTCGTTCTGCTCGGGCAAGAGCGCAGCCGCTCGGGTATCTACAAAGACCTGGACTCATCGGTTGCGTTCACAGGAAAAATGACAGGAGTGAACATGTGGGATCACGTGCTGGAAGCAGGGAGGATTAAAGAGTATGCCAATCAAGACGGATCATGTGATAAGATTGGGAATGTGATTGGATGGGGTGTGTCAGAGATCAATCCACATGGTGGCTCTCAATATATCAACTGAGACTGCACCTGTATTAAGTAATATTACATTGCATATCATCAATGATTTTGTATTTACCTTCTTTTCATTCCAAATGCAAAGCACtgcttaaaggagtagttctgCCAAAACATCAAACTTGCCGTTTACTCATGCTCAGGCCGTCCAAGATTCTTCAGTACAAAAGAAAATTTTCAGTCGAACCTATGATCCCTGGTGGTTCATTAAATGCAgatcaagagaaaaaaaaagaaaaagacaaaatgaatgCCATGGCTGCTAATGATATATTGAGGTTTTcagaattcattatttttttctgtaaccattttttttactgacagtACCCATTAACCTATATTTGATGAGTATAACACATAGAAACATGGttacaaacaactaaaaatctTCAGTACTGTCAAAAGCATCTTGAATGGCTTgacaatgtttaatttttgagcaaactatttctttaaagagataatcttcataaaaataatatttctatcaTCATACACACCCTTATGTCATAGGCCTATATTTTGGATCGTTTGCCCATGTAATGAAATCCAATGGGGTACAATGGAATTTTATTGTagagttaaaaacatctgaaacattCTCCAAAATATCCAACATacacaagaaataaaatcaagcaTGTTTAGAATTAAATAATGAAGGATGAATGATGATGCAAATTTCATTTCTGGATGATGATctctttaacattaaaacactgTACACCAAGccaattaaaatagtttaatattgtgtattttttaaccTCTTAAGACCCATGAAAAgagttttataattttttgttttaatttaattgtttagaGTAGTAAAaataatctgcaaaaaaaacaaggatTTTTAATCCATAGTTTATGTCCTTGTTTGAGGACATCGGGAcccaatttctttaaaataatgaaaatacatgAATGGGATTAAATTCACCAATacacttttagtttttaagttattttttgtttaccaaaCTTTGTATAAAGAAGACTCTCAACTTTGATATAACATAAGTATTCGATATACCATTTTTCTTTGGCAAAATTTGCGTAAAATGGTCATAGACAGGTTTTCTCACTACATACAATGTATCTATAAACTACATTGAATTTGCATCTTAATGTGTTTTGGGGGCAACATATCAtgaaaaaagaagtgtaataatgGGAGTCATAATTGACAagaatttcataaaaatgtgtaatatttattagaaCAAGGAGACCATGGTGAAACATCCAATCATTTGGTATCTCTAAAAAGCCCTGAATGTGCTCTGTACAggacatccagactcaaaactgtGACATGTACAGTCTCAGAGAAattcaacaaaatataaatgtcctCATCTGAGGCCGCAGGGTCTTAAGaggttaattattattattttactttttagcGGAGAATTCCATTACCATGTAAATAAATTAGGTACACGAGTAAAGAGCTAATAAATTCGAGTGGTGTGGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 46427 16950834 ~ 16978756 (+) False G12782
TU18885 lncRNA upstream 52645 16962728 ~ 16972538 (+) False G12782
TU18884 lncRNA upstream 52645 16970362 ~ 16972538 (+) True G12782
TU18889 lncRNA upstream 58081 16958408 ~ 16967102 (+) True G12784
TU18875 lncRNA upstream 67924 16936932 ~ 16957259 (+) True G12776
TU18939 lncRNA downstream 93337 17123139 ~ 17123367 (+) True G12818
TU18944 lncRNA downstream 103275 17133077 ~ 17134888 (+) True G12823
TU19158 lncRNA downstream 131374 17161176 ~ 17162972 (+) True G12972
TU19161 lncRNA downstream 152382 17182184 ~ 17270444 (+) True G12975
TU19169 lncRNA downstream 157315 17187117 ~ 17190607 (+) True G12982
XM_043220670.1 mRNA upstream 10831 17009566 ~ 17014352 (+) True klhl6
XM_043220673.1 mRNA upstream 10831 17009569 ~ 17014352 (+) False klhl6
XM_043220682.1 mRNA upstream 15956 16997089 ~ 17009227 (+) True pak2a
XM_043220730.1 mRNA upstream 28568 16994689 ~ 16996615 (+) True ing5b
XM_043220723.1 mRNA upstream 28568 16994693 ~ 16996615 (+) False ing5b
XM_043256547.1 mRNA downstream 2337 17032139 ~ 17039903 (+) True golim4b
XM_043256557.1 mRNA downstream 2337 17032139 ~ 17039903 (+) False golim4b
XM_043256563.1 mRNA downstream 2337 17032139 ~ 17039903 (+) False golim4b
XM_043256569.1 mRNA downstream 2773 17032575 ~ 17039903 (+) False golim4b
XM_043223951.1 mRNA downstream 10200 17040002 ~ 17044773 (+) True pdcd10b
TU18526 other upstream 756386 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2242206 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2242479 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2845568 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 2517 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 332443 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 537039 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 577450 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 749537 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile