RNA id: XM_043224892.1


Basic Information

Item Value
RNA id XM_043224892.1
length 3542
RNA type mRNA
GC content 0.44
exon number 4
gene id si:ch211-153l6.6
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9563231 ~ 9570989 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcGTTGGGGTGATGTTGCACAGCGAGAGTGACCTTGGTCGGaattatgtactgtatgtacaaaATCGCGTGGGCAAAGCCAAGCGTTCGATATTCGGTTGAGAAAGTGTGGGCGCCCAGAGGGACAGAGCAGCTCTGCAGCTCAGCGCAACCGGTGCTGGCGGGGCTCAGACGTTCAGTCGCGACCGTTTCAGTCAATATCCATTTTATCTGCTCTGATTCACCTCCGACAATCGCTGAAGGATCGATAGGTCCGAACGGGAGTTTGTCGCGAGCTTGATTCTCCCTCTTCGAGTTCAACCATATGAATTACTCTCGACGCGTCGCCATTTGGTTACTCGCTTTATCTGCGCAAATTACACAGGCATGCGCGTATTGCGGTAGATTGGAGATGATATCCGTTTGGCTCCTGTTTTTAAAGCTGCTGAGAGCCACAGCTGGTGTGCGAAGGTCAAATGGAAGTGAACTAAATGACAGCAAAAGCACCTCTGTAAATCAGCAACAAAAAGAGCAGGAAGACCTCTCTGAAACAGTCACCATGGAGACCAGCCAGCTTTCAGAAATGGCTGATCTAACAGACTGTAAAATGGATCCTGGGTTTACAGATGACCAGACATGCCAATTcactgaggaggaggaggaggtgaataaatgttttgtcaCATATTTCTCAGAGTGCCTGGATACCAAACAGAGCAACCCACAAGAAGACCTGGAAGGGCAAGAAAACAAAGCCATAACTAATGAATGTGATAGCTCAGGTGAATCTGATGGAAGCAGAGACTCTCAGGAAGGCATTATGGTCAAGGTCAATGAACAAAATGACCCAGACAGCAGAGAATCTTTGGCCTTTGAGTCTAATGAAGACTCTCTCATGAATGACAAAGCAGAAGAAGAAATGGAAGTCAACAACATGCATGATGCCCAGGAGGAAGAACATGATGTACCTGATGAGGGGGTGGAAGCACAAGACAATTCTATTCTGGAAGCACAAGAAGAATCTGTGCTGGAAGCACAAGAAGAAACTGAGCTCAAAGAACGAGAAGAATTTGTTCTGGAAGCACAAGAAGAAGCTGAACTGCATGAACGAGAAGAATCTGTGCTGGAAATACAAGAAGAATCTATGCTGGAAGAAAGAGATGAATCTTTGTTGGAAGCAAAAGAAATATCTGTGCTGGAGCAGCAAACGAATGAGCTGGTGATTTCTGaactcccagctgaatcttttctgGATATGGACCGAGATGACCTAAGTGACTGTCTGCTTGTGGAGATGGCCATCATTTCATCAGACAGTGATGCTGAGGAGCCATGGAGGTCTTTAGCTCCATCAGCTGTTGATAAAGAGATTGAAGAGAACTGTAATCTCTTGGGTATGAATGCAGCAGAGGTAGAGTCAGAAGACCAAGCAAGGCAAGAGGACAATGAGGCGATTGATAGCAATACTGAACTTGAAGATGAAAATCTGGCATTGAACATTATTGAAAGTGAGATTCTAGAACAACCAGAGTGTCCCACCGAATGTGAGCTACAAGATGTTTCTTTGGACTCCTCTGCCCATTACTGTAGTTTAACAAAGATTgcagaggatgaggaagagctCGGTAAAACCTCAAAGCACAACCTTCAGCGCCTGTCTTGTTCAACTTCAGAGCTTGACAAGAAGTTGCCAAAAGACTTTTGCGTGGTTCAGGAAATAAAGAGCGAGAATGTCAGCACGGAGCATCTGGATTTCAGGGTGGCTCGCAAGCAGTGGCAGAAGATGGAAGAGCAAACAAAGGGTCTGGTGCACCGGCCAGTGACGAGGCAGGCATCTTGCCAAGGTGGACATAGCTTCATGTATACACCTGTCCGCAACATTGATCGCCCCAGAAGAGACCCTGACGTTGAGAGTCTTGGTCTGGGAGATTACCAGTGCACACAGTTCAGCCCCTGTTCAGAGGACTCAGGTCTAGATGACACAAGCTTCAGGTCTCCTTATGATGAGCCAGAAACTCCAGTGGAGAGGGAGATCCGTGAAGCTCTCGAGCGAGAGGAGAATTTCAGACGAGAAAGGGCAATGGCAAAGATGTCTGCTGGTGACACTATGCAAGTTAAACCCAGACCTGGTGTCCTTCACCACAGCAGGTCAGAGCCTGGAGAGAAAGGACGGATGTTTGACACTCCAGAGGACAGATGCAGATCTCAGAGGTCTCCTAGTGCAAGAACTCCAACTTTGTCCGTCACCACTTCTTCTGGAAGAAATCCCACATACCATGAAATGACCGCCAATAATGTCATTATACTTGAGCCAGATTCGTACCCCTCCAGCCCACGGAGCCGAGGAAAAGGTGGGAAGCTTTCTCCAGGGACGAGCAGCTTCCAAGAATGGTCATCAGACATAAATAATGTCATTATCCTGGAGACATCAAATCTCATCATTCGAAGTGCCTCTGAATTCTGCCTGAGCTCTGCATGTCAAGAAACACAAGAGAGTACCTTTCAAAACAACCCCTTTTTCAAACTGCGCTCCCACAGCACCCAGTCTCTGGTGGATCAGGAGATCAAACTGGTGAGGCAAAGAGAAGAGGAGCTTAGAAGGCAGAGAGCACAACTATATGTAAAGGAGAGATATGACACAGTCCTCGTGTCCCCCAACCAACTGCAGAATTTCACTTATGAGAAAACAGGAGAAGTGCCAGCAAAATCCAAGTCATCCCCCTCATCTCCATCAAAGACGCGCAAAATGGATCGCACCGCTTTGTCCTGCGACCACAAGTTCCCTGAGGCACCTTTCCCTCGAGTCAGACGGAAAAGTGCCCTGGCCCAGAGATGGGAAGCAGGTATCTTTGCCAATCATCAGCAGCAAGACTGAGTGATTTGCCTAAATGAAGCATCGAAGCACAAATCAAGTTTCTATTACATTATAAGCATGTGCAAATAGTTTTAGagtaaaacattcattaataatacaaacCTGGAACTTCATAGGTGAGTAAAAATATTCACAACTGATGTcatacctttttaaaatgtttgaatgctAGTATTTTCACTCCGAATTTTATCCTGGATACACTTTTATATTACTGCAGATGAAGAATTTATAACATAACGTATTCCTAAATTGCACTATGTACAAAAATGATGCCaaacattgaaaaatgtattattctaATTTATATTAACCATACAGTGAAGAGcagaagcaaataaaaatacatttatctttGATTTAATCTGAACAAAAGTGCAATTTAAGACAAGAGAAGGCCGCTTGGAATGTCTAACAAGAGTATATTGTGGATGTAGCTTCCAGAGGTGTTACAAGAAAAGTAGCTGGTTTCTGTACAATTACATTGTGagccttttaaatgttttatgctttGATTGTCTGGATATAATGTTGACATTTATTCTTctgtgaaaataatttaaaagatgtgtgaattttaattcataatattcATGTTTGAAATGTCTTAATAGATACGTTTCTTccttgcaggatgttttcaatGCAAAATACTGTTCAAACcttgaataaaatgaaactgaTGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15720 lncRNA upstream 54550 9486177 ~ 9510133 (+) False G10571
TU15704 lncRNA upstream 109938 9454366 ~ 9454745 (+) True G10557
TU15580 lncRNA upstream 348019 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 506824 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 508438 9055723 ~ 9056245 (+) True G10445
TU15733 lncRNA downstream 6182 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 31377 9602366 ~ 9603843 (+) True G10604
TU15857 lncRNA downstream 254626 9825615 ~ 9826220 (+) True G10674
TU15953 lncRNA downstream 418154 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 421795 9992784 ~ 9993395 (+) True G10749
XM_043219866.1 mRNA upstream 2446 9554231 ~ 9562237 (+) True palmda
XM_043219859.1 mRNA upstream 4793 9554231 ~ 9559890 (+) False palmda
XM_043224544.1 mRNA upstream 25160 9523028 ~ 9539523 (+) True plppr4a
XM_043218021.1 mRNA upstream 231356 9321702 ~ 9333327 (+) True ptbp2b
XM_043218030.1 mRNA upstream 231356 9321702 ~ 9333327 (+) False ptbp2b
XM_043260965.1 mRNA downstream 7066 9578055 ~ 9600236 (+) False agla
XM_043260956.1 mRNA downstream 7763 9578752 ~ 9600236 (+) True agla
XM_043260948.1 mRNA downstream 7763 9578752 ~ 9600236 (+) False agla
XM_043260979.1 mRNA downstream 33199 9604188 ~ 9606195 (+) True si:ch73-14h1.2
XM_043260989.1 mRNA downstream 33199 9604188 ~ 9606195 (+) False si:ch73-14h1.2
XR_006252402.1 other upstream 392768 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1456906 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1982298 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2577564 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2872308 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 175605 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 340639 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 340639 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1140141 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1669137 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile