RNA id: XM_043224994.1


Basic Information

Item Value
RNA id XM_043224994.1
length 2515
RNA type mRNA
GC content 0.41
exon number 3
gene id agtr1a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11593151 ~ 11598650 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGAGGGGTGTAGAGGAAAAGCACCAGGCACTCTGTTAAGACAGAGACTCAGGACAGATCTCTTAAAGCCAGTTTTGGAACTGATGGAGCAGCTTGGATGTCACCTTCACTAAAggtaaacatgcatttatattaattacaaatgtgtttgtttttttaattattacctTAAATTAGAATATTTAATCAAACCCTAATCTTAGCCCAAAGAGATGAGCAAGCTTGTGAGTTAAGAAAGCTCCTTAACCCGCAATTGATGTAAATGACATGTGTTCATCTCAGCACGTTAAGATTCAATGTCAGGGGCTCCTTTAGCGACGCAGCTTTTTAGGCTGTGAACCTGAAGGCGTGTTTCACAGATCTCCAAAATGGACAACATCACAGCCGACTCTAACGTGGGACTCAATCTCACGTGTAACATGACCGGGCAGCACGATTTCATCTTCACCTTCATCCCAGTAGTCTACAGCTGCAACTTTATCATCGGAATCGTAGGCAACAGCCTGGTAGTCGCTGTCATCTACTTCAGCCTGAAGCTGAAGACAGTAGctaacatatttgttttgaacTTAGCCGTATCAGACTTGACTTTCCTCCTCACCCTGCCCATATGGGCCATATACACTGCAACAGGCTACGAGTGGCTCTTTGGAGACTTCCTATGTAAAGCCATTGCTGGTATGGCCCTGCTTAATCTATATACTAGTATTTTTCTCCTCACTGCTCTCAGCATTGACCGGTATCTGGCCATCGTTCACCCCGTCAAGTCCCGCCGATGCCGCACAGTGGCGTACGCCCGCGTGACCTGCGTCTTGGTTTGGGTAGTGGCTTTCCTTTTAAGCCTTCCCACAGCCGTTATCCGTGGGACCCATTTTATCCAGCATAACAATGTCACTGTATGCGCCATTCTAGAAGAAAAAGATCTTCGCAACGTGCTGGCGGCTCTCAGTCTGGTGAAGAGCGTTCTTGGGTTCCTTCTGCCCATCAGCATCATCCTCACGTGCTACTGCCTGATTGGCCGGTCTCTGCTGAAAGCACGGGACATACAGAGGAACTCGAGGTCGAACGGGGATGAGGTGTTGAGCATGCTGGCCGCCGCGGTGCTGTCGTTTTTCCTTTGCTGGACGCCGTATCAGATCTTCAACTTCATGAACATGCTTGGTATGCTGAAAGTCATCACCAACTGCGATGCCATTGAGATCATTGACACCGTAATGCCGTTTACCATTTGTATTGCCTTTTTCAACAGCTGTATGAACCCAATTCTGTACGGTTTCGTTGGGAAGAACTTCCGCAGGAACTTGCTCAAGCTCTTGAGGTGCACCTCGACTTCTGTGGCCTCTCACCCCACCCTTAGCACCAAGATGAGCTCTCTCTCGTATCAGGAGTCGTTACACCTCTCCGTCAATAAAATGTCCTCAATACCTCAAGCCACATgagaaaaacaggaaatgaatgaATCTCCGATGAATCATCTTTCTGAACTCGCTGATTCAATTCAGAAGATGAGTCTTGCTTGTTGTGTTATTGCTTTATACTGGAATGGAAACTAAATATAGCGACTTatctttttgtctttgtcttttgtATTAGGTGTAAATATAGCATTATCGACATGCTGGTATGTGTAACTTTGATGCAagaacattatatatataccactgttatatatatatatattgtgttaaGTTAGTTTTTCACCTTCCTCACATTTCCACCAAAGGACAAAATCATGctgaaaatactaaatatattttatataatattttaaccaTCTAAGCTGTTATAGTGGCATTTGTGCAatttaaatgctgtattttcGACCAGTGTGATGCatgaatgaaatcaaaatcTATCGTTCTAAACTTTTACAGTGGTATTTTTACTGTTCCTATGTCTCATAGCGCCACTGGGTAGGCCAGGagtttacaaacatttttatgtcaaatataCCCCCAAATATGAATGTCATTAACAATAAGTttttataaactgcatttttttgtaattttgtaatatatattattgacaGCCATGCTTTTCTTATTCGTTTATTAATTCACTATCACAGTCTCATGATTTCTGACCTGACTTTAGAAAGCAAAGTGAATAGTGTAATGttctttagttttatttatttaaattaatttacttgACCTTTTTTCCTCCCCTAGCACTCCCTGTTTGGATCCCAGTTTGAAAACTCCCGGATTAAACTAAACCATAACAAGAATATAGCATAATAACAAGATATTTTTACATACTGCCTGTGCGAGCGTGGTCAATACTCTTTAGCCTTGATATGAATTATCACctgatgaatattttatttttcttataccGCTGTTGTCGTACTTCGAGCAGGATCTAATGGTCggtaaaactgttttgttttggggttttttcctGAGAAATTGTATTTTGCATCATGCTGTTCTATATAATGTACTTGAGTCTGAAAATGTATGTTAACaggaaaacataaaataaataaatctattagAGTACCCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA upstream 91565 11500389 ~ 11501586 (+) False mast3a
TU16609 lncRNA upstream 136287 11456326 ~ 11456864 (+) True G11191
TU16608 lncRNA upstream 137743 11454258 ~ 11455408 (+) True G11190
TU16607 lncRNA upstream 139040 11453571 ~ 11454111 (+) True G11189
TU16604 lncRNA upstream 143718 11448763 ~ 11449433 (+) True G11186
TU16626 lncRNA downstream 10601 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA downstream 11825 11610475 ~ 11611087 (+) False LOC122328936
TU16629 lncRNA downstream 15591 11614241 ~ 11618863 (+) True G11207
TU16942 lncRNA downstream 502225 12100875 ~ 12101126 (+) True G11419
TU17037 lncRNA downstream 739017 12337667 ~ 12339049 (+) True G11505
XM_043252946.1 mRNA upstream 5247 11585825 ~ 11587904 (+) True LOC122354667
XM_043252958.1 mRNA upstream 7441 11581166 ~ 11585710 (+) True rab3aa
XM_043263970.1 mRNA upstream 12728 11558865 ~ 11580423 (+) False pde4ca
XM_043225009.1 mRNA downstream 237 11598887 ~ 11605633 (+) True gyg1a
XM_043262822.1 mRNA downstream 41709 11640359 ~ 11679922 (+) True stag1a
XM_043222120.1 mRNA downstream 87127 11685777 ~ 11690923 (+) True msl2a
XM_043261691.1 mRNA downstream 111534 11710184 ~ 11782407 (+) True ppp2r3a
XM_043261695.1 mRNA downstream 173138 11771788 ~ 11782407 (+) False ppp2r3a
TU16617 other upstream 87421 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 93073 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 94214 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 252040 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 336387 11240126 ~ 11256764 (+) False kcnh2a
XR_006252734.1 other downstream 309423 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 681261 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 681940 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 682722 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 1025173 12623823 ~ 12626387 (+) True LOC122358236

Expression Profile