RNA id: XM_043252958.1


Basic Information

Item Value
RNA id XM_043252958.1
length 2485
RNA type mRNA
GC content 0.40
exon number 5
gene id rab3aa
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11581166 ~ 11585710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTCATCTACATGTCAGTCATtgtttagccccgcccccaGCTGGCTCCAGTCGAGTGACGAAAGCAAGAGCGCAGGTGCACGGGCTGGAAGCTGCGTCCGATCCGCACCAAATAAACCTCCTGTTAAGATGGCCTCAGCAAACGATGCTCGATATGGACAAAAAGAGTCTGCGGATCAGAACTTTGACTACATGTTTAAGATCCTGATCATTGGTAACAGCAGTGTCGGCAAAACCAGTTTCCTGTTCCGCTATGCTGATGACTCCTTCACTCCCGCTTTCGTCAGCACTGTCGGCATAGACTTCAAAGTGAAGACCATCTACCGAAATGACAAGAGGATAAAGCTCCAAATATGGGACACTGCTGGACAGGAGAGGTACAGGACCATCACCACAGCATACTATCGTGGAGCGATGGGCTTCATCCTGATGTATGACATCACCAACGAGGATTCCTTTAATGCCGTTCAGGACTGgTCCACACAGATTAAGACGTATTCATGGGACAATGCTCAAGTACTGCTGGTGGGAAACAAGTGTGACATGGAAGACGAGAGAGTGGTGGCTtcagagagaggaagacagcTGTCTGATCAGCTAGGCTTTGAGTATTTTGAGGCCAGTGCCAAGGACAACATTAACGTGAAGCAGGCGTTTGAGCGACTGGTGGACATAATCTGCGAGAGGATGTCAGAGAACCCGGAGACGGCGGATCCGTCCATCACAGGAAACAGACCGGGCCCTCAGCTCAGTGAGCAGCCGCAGCGCTCCCACAAAGACTGTGCTTGCTAAGAGTCCCTCTCAACCTCTCCTCCGTTCCCAGCAGACTGAACAATGGACGCTCTAGGAAACAAGGCTTCGGTAAGAGAAGAGCTGATGGGATGCAGCTGAGAACCTGTCCTCTCTCTGTCCCTTCTTATCTCTTCagcatttgaataatttaatctCTTTTAGATTTCGGGGTCAAATTAATTCAGACGTGAAATTGGgtgaattacattttgttttggtaCACCGTCTGCTAAAACAAATGTTGCTAAAATTCGAGCGTCTCTTAGATATGTTTTCAGATTCGTCCTCAATACATTGCCagaagatattttattattgtctaaaCGGTACATTTGGGACAAGATTGTCGTGTGGAAACCATCGGCATAAAAGCTCATCCCAAGATGGAACGATTGAATGAATCCTAAGCTTGAATTGTTCATAAACGCCATTTCGctcttaatttttaaatgaaagagtGAAAATGAAATGCGCACTAATTAATTTGCTccctattattttttaaataacagcaaGTGTATTTTGTAagacatatattatattatataagcaaAAATGGTATATGTGTTATAATAGATGTAATTAGAAAAGATAAATATGATGTGCTTaattgcttcttgttttgtaatataaaggaatgaatgaatttaagtGTGTTTTCAGTTACGTGTTCTGCTTTTCCCCCGGTTCCTACATACAGGTGGTCTCAAACTCACCataaagagagtgtgtgtgcatgttagTATGCCATCCTAGTATATTGCAGATGTTTAGTTTTTACAGACTGCCGATTACTGCTGTTCTACAggctaaaaacacaataaaagcttTAATTAAAAGACAGGCTAAATCAAGGAAGAGCAGCTAATGGgtttaaagaattaaaagatTTCGAAAAGgctaatatttaaacaaaatgcattgtgATTAGCTTGAAGTTCTCATTGAAAACACTATATGCTATATGCACTAAATGATTGACATATGTTAATGCGCACAGTGATGTTAATTTTGTTGTAATTAGGTATGTTACTGCTctatttattgcttatttatttccATGCGTGTTCTGCGTTGGATTAAGAGGGCTGCTGCTATACTTAAAGAACAGGCTTGGACATCTGAAATGTCTCGCTTTTTATAAATCAgagttttaaaatcaaaaggcaatgaatgtttggaaacaTCATGTATGTAGAAGCTCGCGGTGATTTCTCCCTATGCAATTCAGAAGCTTTGTTATACCAAATAGTCACTGGATGTGCAGGGACACTGTTTGTAAGGTAATTGACTATTTATATCCTTcgtttaaaaccttttttacaGCCCAACAAATACCAAACCACCgagatttcctttttttatacaGAGAAATTTGACACATTAGTATGCGCTATAGGCAGAGTGATCACTGTTAAAGTACAAGCCAAAAAAACAGAGTTTTGGATTTGATACTCTTTTTGTAGTTGGCAGTTTgagtattgtttgttttgtaatttttgtaaaatagctctgtcatttttaaaagtgatatACATCATGCTGTGTTTCACCCTGAGAGATAATGGTAAGAAAAAAACCACTGTATTAGCAACCGATTATATTAGCAGGACGATCGGTGTCATGAGTTTTACGAGAGTCAAGTGACCACTTGCTTCTGTTTATTGAATTCAATAAAAAGCTACGTTATAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07883 RAB3C; Ras-related protein Rab-3C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA upstream 79580 11500389 ~ 11501586 (+) False mast3a
TU16609 lncRNA upstream 124302 11456326 ~ 11456864 (+) True G11191
TU16608 lncRNA upstream 125758 11454258 ~ 11455408 (+) True G11190
TU16607 lncRNA upstream 127055 11453571 ~ 11454111 (+) True G11189
TU16604 lncRNA upstream 131733 11448763 ~ 11449433 (+) True G11186
TU16626 lncRNA downstream 23541 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA downstream 24765 11610475 ~ 11611087 (+) False LOC122328936
TU16629 lncRNA downstream 28531 11614241 ~ 11618863 (+) True G11207
TU16942 lncRNA downstream 515165 12100875 ~ 12101126 (+) True G11419
TU17037 lncRNA downstream 751957 12337667 ~ 12339049 (+) True G11505
XM_043263927.1 mRNA upstream 743 11541545 ~ 11580423 (+) False pde4ca
XM_043263936.1 mRNA upstream 743 11541563 ~ 11580423 (+) False pde4ca
XM_043263945.1 mRNA upstream 743 11545775 ~ 11580423 (+) False pde4ca
XM_043263954.1 mRNA upstream 743 11545781 ~ 11580423 (+) False pde4ca
XM_043263978.1 mRNA upstream 743 11550837 ~ 11580423 (+) False pde4ca
XM_043252946.1 mRNA downstream 115 11585825 ~ 11587904 (+) True LOC122354667
XM_043224967.1 mRNA downstream 7441 11593151 ~ 11598650 (+) True agtr1a
XM_043224994.1 mRNA downstream 7441 11593151 ~ 11598650 (+) False agtr1a
XM_043224985.1 mRNA downstream 7444 11593154 ~ 11598650 (+) False agtr1a
XM_043224999.1 mRNA downstream 7457 11593167 ~ 11598650 (+) False agtr1a
TU16617 other upstream 75436 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 81088 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 82229 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 240055 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 324402 11240126 ~ 11256764 (+) False kcnh2a
XR_006252734.1 other downstream 322363 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 694201 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 694880 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 695662 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 1038113 12623823 ~ 12626387 (+) True LOC122358236

Expression Profile