RNA id: XM_043252996.1


Basic Information

Item Value
RNA id XM_043252996.1
length 5253
RNA type mRNA
GC content 0.44
exon number 11
gene id mbnl1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23563764 ~ 23624866 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAACCGGCGTGATTGGCGCTCGACTTCGGCGCTCTGCGCAGTGCTGCTGTTTCTCgcaggctcacacacacacacacacacacacacagtggcgCAACCAGCAGCCACACGCGCAGCCTAagcgctctgtctctctctatctgtctctctctctctctctctctttctcctcctctctgagAATGGTCCACCCGGTGCCTGAGGCTCTGCTGTCGCGGCCTGCCGCCCGCGTctgatctctcacacacatacgcgCTCTCAATACTAATCATGATGTGAGAGgtGGGTACTGAGTATCGTGCCCTCTCTTGCGTCTGCCGCTGCTTGGACCTGCTTATAGTACCAGCCTCAGCTTTCCTGCCTGCTTGCTGCCCACATCAGTGAAAGGACTGCCCGCACAACCCCACAATCCCTGTGACCCCGACAAcctctacacaaacacacagagctgaAGTGGGCACTATtgaatcagccaatcagattcaaggaTTTTTGCTTTGGGATCCATTACTGCAGTTCTCTTTTTCCAAgcagcaacatttttttttgtcctttttgctTCGGCCTGGTGCGCATTCACAAGCAAAGAGGAGCTTAATGATCTAAGAAGGAGAGGAACATTCTTAAAAggacaaacacaagcacacccAAAGCACTTTGGGATATTAAGGAATCGAAGTTTGCTTGCCGCTAAAGCGTGTTGAGATGGCGATGAACGTGGCTCACATGCGGGACACAAAATGGCTGACGCTGGAGGTGTGTCGAGAGTTTCAGCGGGGAACGTGCGCTCGCTCCGATGCTGAGTGCAAGTTCGCACATCCCGCCAAGAGTTGCCAGGTGGAGAACGGGAGAGTCATCGCGTGCTTTGATTCACTGAAGGGTCGTTGTTCCAGAGAGAACTGTAAGTACCTGCACCCTCCTCCTCACCTGAAGACGCAGCTGGAGATTAATGGCCGTAACAATCTGATCCAGCAAAAGAACATGGCAATGCTCGCCCAGCAGATGCAGCTAGCCAATGCCATCATGCCAGGAAGTCAGCTTCAGCCAATGCCTATGTTTTCGGTCACCCCAAGCCTTGCAACCAACGCCAGTGCAGCTGCTGCAGCGGCCGCCGCAGCTGCGTTTAATCCGTACCTGGGCCCAGTGTCTCCTGGGCTGATGCCCGCAGAGATCCTGCCCAGCGCACCTGTGCTGATGGCGGGCAGCCCTGCTGTGGCATCCGTGCCGTCCGCTGCCAACGCcgcagctgctgctgcttcagCGGCGGCCGCCCAGAAACTCCTCAGAACAGACCGACTGGAGgtgtGTCGTGAATACCAGCGTGGCAACTGCTCTCGTGGAGAGACGGACTGCAGGTTTGCCCACCCTGCCGACAGCACAATGATCGACCCCAGTGATAACACAGTGACGGTGTGTATGGATTACATAAAGGGCCGCTGCTCCAGAGACAAGTGCAAATACTTCCACCCTCCTGCGCACCTGCAGGCCAAGATCAAAGCGGCCCAGCACCAGGTCAATCAGGCCACGGCCGCCGCTGCCATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAAGCCACCTTTGACCTGGGAATTCCTCACAGTGTCATGCCACCTTTACCAAAGCGACCTGCGCTTGAGAAAGCCAACGGTGCCACGAGCATGTTCAGTACTGGCATGCTCCAGTACCAGCAGGCTTTGGCCAACATGCAGTTTCAGCAGCAAGCTGCCTTTATTCCGTCAGTTCCCATGATGCACGGCGCTTCCCCGGCCGCTGTGTCCGCAGCAACCACATCTGCCACAAGTGTTCCCTTCGCATCTGCATCAGCCAATCAGCTGACTACCAACGAATACATGCAATTGATTCCAATAATATCTGCAGAGCATCTGACTAGTCACAAGTACTTGACGCAGATGTAGTTCCAGTCCACAACAatCAAAGGAATGTGCTGTTGCCCTGGACAAAaggcaaagaaacaaaaaattcaaaattttatCGTCAAGATCACCGCCGGATAGAATATAGTATGAAGATTAGAATTTGTTCATACATGATGGTAGGGTTTTACTGGCGTGAAACTGAATGTCCTCCCACATGATGTGTAGAAATTGAGTGAAATACGTCGCTATGTCAGACAGGGCGGCATTTTTACTCTCAAGCTGGATTAGTAAAAGAAAAGTTCTTTTCATGACACCGTTTTGGCATGTTAGTAGACCaagagatattttattttatttttttgtgattcacACCTTGATTTTCTTTCCTCGAAATTTGTCCGAAGGTTTACAAAGTTACAAAAGGTGCACCTTGAATTAAATGGCGAATCGAACGTCGATACGGCACAAAACATCCAGCAAAATAATTCAACGTACGTAGTTTTCTCTATCTTTAGTTCTGGCTTCTAGTCCAACTAGATTGTAAGCGCAGAGTTCGAGATTGACGGATGAATGTTTTGGGTAGAAACCGATCACCTGAGACCTTTCAAAAGCACATTCTTGCAAGCTTTATGTACCATAACCACCGGCTGAATACCAGACACCGATCTAGAGTGTTATATCAACAGTGTTATTATGTTTACCAgagattaatgttttttacagcgcttgtttttatacataatttcacaagtgtgtgggttttttaTGAAACgtgccatttttatttgtcGATCATCCATTAGGCCTTGTAGAACTATGAAGCCTTTTTGACTCCTATGAGAACAGGGTTGCCTTGTTCCTAATGCCCTGTTTCTTTATATTGCCTTGATCGAGAGAATGTGGCGTTGGAAGGTAATCGAGAGTCACGTAAGAAGAACGTCAAGGTAGCGTAGATTCGTCAGTCTCGCGTGGAAACGAGCGACCGCGTTCCAGTCTTCGCCGTAACGGTGTGAGGACTCTAAAATTCTTGCTGGAAAAGCACTGCTTGAGTATTTCGTTACAGATTGTGAGTTTGAGACTAGGTACACGGAAGGACGAGGTTAGCGTTGGGTCAGGGTTTGTCTTCAGTTCTCATCTGTGTTGatttttgagttgtttttcGAAAATCTCGCCACCGCTGGATGACGTAAAAGAGGAGCGGAGAATATAATGAGATGTTGTTTTTCAAATTAAGTTGTGCCAAagtcttttttcctctttttatttaaatgtgtttcgACGGGGTATACCGATCACAGAAGGCGAATAATTTGTATAGCTTCGTTTTACGTACAAGGCTGCTTGTCAACCAGGAAAGAGACGTTCACATCAAGGTACCCAAGTTACTCGCGAGGGTTTTAGCATCACGACCAGACTCAAGAGGAAATGAATCCCGAGTTCACTTGAGTCTGGATTTCAGCCTGGTTTAGGTGCACAGACTTGAAAGGATGCACACCATTGCCGTTTCCTCACTAAAGccttatatttcagtgtttgaaCCCACACAAACATTCTCTCAATCACAAATGGGAAATTACAGCGGATGAGATTTTATTCTTCACActtattttatgtgtatattaatCATGTTACACTTAACGTTCACTCTGTTTCAAAGCCTTTGTTAGAAATATATTGTGTTGTTTgcatataaagatttttttttttttgtatttgactaTTGTCATAGAACTGTTTTAGAACGTAGGgaatgaaatattgtttttcttactGTCACTTTCTTTTACATCTTGTTAATTTCATAATGTTTAGCTAGTAGTGTTGTACTTTTAATTCTTCATGTTAGTTTTCATGGTAGAATGTTTGAAATTTCAAggattttggttttgaatttgttgaacaaaatgttttatcttgTCTTAAAACAGAGCGACGGAAAGAGAGTTTATTTGTAGCCTTGGCAAGGTTGATATTTTAACCCTTTATTTTGTGTCGAATCAAGACCACGTCTACAATTAGCTGGTTAAATTATCAATTGTACATGCTAGAGTAAAAGAAGTTATTTTCTACTGTATGcatttcagaatttaaaaaaaatcgtcttgtaatatttcaagaaacgaaaaaaaaaaaaacatccctcAATGTCAGGCCAAAATGAGCAGCAACTTGTCTCCAGAGATTTCAGAATATTTAAAGACGTAAAATAAAGGAGGGAGGTCACAGGGTCGGGCCTCGAGCTGCaaacgagagagagagccaTAACTTAAGGGACGAAGGTTGACTTTTTGCACTTCTGTACATAGTcaatataaagaaaagaaaaggaacatGTATAATATTGAGatcttattttgaataataaaagattcTATAACTATGAGAAATTTTCTTAGGATAATTTAAGAATTAGAGTAATAGTCCAGCTAACAAATGATGCTTGCAGAAATATGGCACAGctcttttattatcatttccGGCCATCacgttcagaaaaaaatataaataaagctcCGCGTTGCCTGCATACAGTACCGACACGTACCGAGAGTCTCAAAAATTGGCAGTACACTCCGCCTCGTCATGATTTTCACTGTGGGGAATtggttttgtttacaaataGATACTACACCttcaaaaacacagtatttGTCATATTATGATGGACATAAAtaatgcatggaaaaaaaattaaccgAGTAAAATTCTCATAATAGATAAGTACGTAGATAAGTTAATTTCTCACAGTACCGTAACTGTCATTGCCACAGCATAGTGTAAATCAAGTATCTCGATCGATATCTGAGCCTGAATTAAGGCACGTTCACCGATAATCCATCTGAATATAACCGTAAGAACAGTACAATTATTAAGAAGGCCTTCAAACCCACTCTAGATGCTAGCAAAAGACGTCCACTTAACACACGATGACAGAAGAGTTGCTTTGTTACTTGGTAACGTGCCTTCAGCAGGAAAAGGACACcaaccacacacaaaaaaaacaacaacaaaatgaatgtAACTGTCAAATCCTCCGCTGAGGTCAGCGTTTTACTCATTTGAGGTTGCTGCACAAGAGCTATTAAACCAAAGCATCACTTTCCTTCACTAAACGCAATGCCTAAAAGCTGGTGGGCCGTTATGGACGGCGAAACCATTGGTGGTCCTGCCTGCTGAAAGCACTTGCTTGGATGCTTAACGCCCTCCATTGAATCTTACACCTGCCCTTTGCTTATAGTTGCTGTAAGATATTGTGCTGCATTCTAAAAGACttgttttatgcacatttattattgttagaaTTGACTCTTACTgttatgagtaaaaaaaaatcttaataaaaacaaaatggattTGCTCAAaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21987 lncRNA upstream 21862 23558249 ~ 23562352 (+) True G14837
TU21979 lncRNA upstream 30981 23550605 ~ 23553233 (+) True G14832
TU21844 lncRNA upstream 403057 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 404459 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 405083 23158098 ~ 23179131 (+) True G14772
XR_006252160.1 lncRNA downstream 17597 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 18146 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 43697 23668563 ~ 23683398 (+) True G14850
TU22023 lncRNA downstream 44924 23669790 ~ 23683398 (+) False G14850
TU21994 lncRNA downstream 65556 23690422 ~ 23691860 (+) True G14841
XM_043253712.1 mRNA upstream 50857 23530770 ~ 23533357 (+) True scg2b
XM_043222059.1 mRNA upstream 141513 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043222658.1 mRNA upstream 323740 23250192 ~ 23260474 (+) True LOC122327352
XM_043220303.1 mRNA upstream 558819 23018357 ~ 23025395 (+) True LOC122325295
XM_043219030.1 mRNA upstream 567734 23005927 ~ 23016480 (+) True mbd3a
XM_043252978.1 mRNA downstream 141 23625007 ~ 23630373 (+) True LOC122354760
XM_043253002.1 mRNA downstream 9356 23634222 ~ 23637430 (+) True LOC122354999
XM_043224637.1 mRNA downstream 73391 23698257 ~ 23702264 (+) True klf6b
XM_043221844.1 mRNA downstream 78635 23703501 ~ 23715237 (+) True pitrm1
XM_043255742.1 mRNA downstream 141092 23765958 ~ 23770492 (+) False LOC122356725
TU21973 other upstream 36240 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 888884 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1655395 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1722772 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1867927 21715355 ~ 21716287 (+) False ccl20a.3
unassigned_transcript_256 other downstream 112185 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 311055 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 458972 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 868572 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1416563 25041429 ~ 25041511 (+) True trnal-uaa

Expression Profile