RNA id: XM_043253028.1


Basic Information

Item Value
RNA id XM_043253028.1
length 3432
RNA type mRNA
GC content 0.52
exon number 15
gene id phc3
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17333696 ~ 17343059 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTGCACCGACGCGCTTCAACACTGCATGGGACACAAGCGGCGGGCTCGCACGATCCCCCAGTGACGCAGGCGCAAGATcttaataaaagtcattttgaaaaatgatgcCCGTCAAATCGTTTGTTAAAAGAAACGAAGACTGTCACGGTGGGCTCGAATGGAGAGGTGGGCGTTTCTTCGTGTCACTGGGTTGTTAGAAGCAGTTAGGATGACTGAGGCACAGATTCGGCCTGCAGAGATCATCCACAACGCACTTCTGGCTAATCGTGGCTAACAAACCCCTCTGATGGGCGACGCAGATAAACAGAGTCAGGAAGAGATGGAGGGCGAGGGCTGTGTCACAACATCCTCCAGCAGCGCTGCACCCAGATCCAGCACTCCCACAGGCACCCAGGCCAACACCATTCCTCTGGGAAACATCACTTCAGACAGACAGGCGGTCCAGGTAATCCAGCAGACGTTACACAGACCGCAGAGCATGACAGCTCAGTACCTGCAACAGATGTATGCTGCCCAACAGCAACACATCCTGCTGCAAACAGCTGCACTACAACAGCAGCATCAACAAAACCTCACGGCTACGCAAATCCTGACAACTGCAGAGCAGGTTGCACAAACTAATGGCAGGCAGCCCGCCTCCTCGCCTCCATCATCCAATGGGAATGTAACTCAGCTGGCTAACGTGTCTCAAACATCAATCACCATGCCAACCTCTCCTGTAACTCAGCCAATAGGTCGCATCCAGGTCACTAGCTCCAATAGCACAGGGGGAGCCATATCCCAGCAGGCCATGCTTCTAGGAAACAGTTCTCCCACAGGTAGCCAGGCCCAAATGTATCTGCGCACTCAGATGCTGATTCTTACTCCTGCTGCCACTGTAGCTGCTGTTCAACCTGATCTGACTGTCGTGAGTTCAGTGTCTTCTCAATCGGCAGCATCACAGGTTCAGAGTTTGGCTCTCCGCACACATCCTCCTGGAGCTCTTACGACTCCCCAGAACGTCCAGATCAAGCCTTCTCTTCAAGGTCAGACCCTGGTGTGCCCCCTGCCCAAGATGTCCATTTGCCCACTGAAGTCCACACAGTTGTCCCAAAACCTAGCAGAAACTTCTAGAAGTGAGTCACTGTTGACCGATGTTATTCGGCCAACATCAGCTCAACCGCTCATTGCTCCTTCAACCTTCACACCAGTCCAGTCTCATGCATTGGTCAGACACCAACTGCATTGCCCTTCCGGCCAGAGGGTGGCACCACACCAGCTCTTCATCCAGCAGAGCTCTAGTGCTCACAGACAGGTCCAGCCCATAGCTCTGCGTGTCACGCCGCAGGAGAGCTGTCCTCCACCCCTCGCCCTGCAGACCCGCACCACTCCCACTACAGCCACCGTCCAATCACAGCACACAGAGTTCCTCTCAGTGCCCTCCTCTTCAAATCAGCCGGCCAGTCAGTCAGCAGTGGTGTCTACGTCCACAGCTCCCCCTGCAGTACTCCCTGACCCTCCACCGCTTCACCTGGGCCCAGTGCTAGAGCCGGTCACTCAGTATTCACCTCTGTCCAGTCCCCCTCCTCTCACCATGGCTCTGCCCAGGCTGGTCCAGCCACAGAGACTGTCTGTCCGCTCAGTCCAGACCGTAGCTGTCCAGTCTGACCACATGCTGGTGTCTGAAGAGGAGCTCCCGGGCGCTGAAGCAGTGGTTCAGTTGCCTTTTCAGAATCTGCCTCCACCACAGACAGTGGCAGTGGACCTAAAAATGCCGCCTGTCACGCAAACAGAAGCTCCTTCGGCAACACCACTGTTGAAGGAGAGCGGAAGCATGGACTTGGTGAAGGATGTTGAACGTGTTTATCCTCAGAACAGAACGCCCACCCCCCCACCACTGTCCCCCCCAGACGAACCTCAGAGACGCTCCGATGATGTCACAGCACAATCAGGAAACTGTAcagCTGATCTGGACCAGCCGAGCGAACCATTGAGCAGATCTGTGATCCGGTCTCCAGAGGACCCCACATATGCCAACAGTCCCCCCCCTCCCCTCCTCTCCTCTGCGGTAAGAAGCACCAGCAGGCTTCCCCCAGCCAGCCTCCCAGGGAACCCTGAGGGTCGGCCCTCACAGGCCATCGTTAGACCTCACATCCTCACACACCTCATTGAGGGCTTCGTCATCCGAGAGGGCCTGGAGCCGTTCCTGGTGAGACGTACTTCTTTAGAGATGAACCTGCAGGCCACACTACCAGAAGATAGAGAGAACGGAGACTCAACCCGGGATGACTGCCTGATGGATGCAGACCATCTGGAGAACTCCACAGATTCTGAACTTGATAACCCACCTGCTGAGGATGaaCAGACAGTTGAAAACCTGCCTGACGTACTTGAATGTGAGTTCTGTGGGAAGAGAGGCTTCGCTCGTACCTTCCTCAGATCCAAGCGCTTCTGCTCCATGACATGCGTCAGAAGGTTCAATGTAAGCTGTAAAAAGCGCCTAAACATGTTCAGGTCAGAAAAAGTTGGCCGCTGGCCCCACAAGCCAATGGGCAAGAGGGGGAGACCACCTAGTCGCATAAATGGAGGGTCCAGGCAACATTTCCTCAGACAGCAGTTGCAAGACTCCCATCGTAACAATGACAACCAGAGGGCCTCTGATACGATTTGGATAGAcagagaagaggagagagatCCACCAGGCCCGATGACGACAAGACTGCGCTTGCAGGCCGAACGAGAGAAGGAgcaagacagagaaagagaacagaGCAGAGTGGAGAGCAGCAGCGGCTCTGACTGTCTTCTCGACTCAAGTCCCTCACAGTGGAGCGTTGAGAAAGTGTGCTCCTTCATCAGCTCTTTACAagGGTGCCGCGATATTGCTGCAGAGTTCCGGTCACAGGAGATCGACGGACAGGCCTTGTTGCTGCTTACGGAGGACCATCTCATGAGCGCTATGAACATTAAACTGGGCCCTGCGCTCAAAATCTGTGCACAGATCAATGCTCTCAAAGAACATTAGACATCTTTCCACTCTCAGTATGTGGGTCACACGGTATTCGAGAGTGCGATTCCTCTAAAGTGCCATGATTTCAGCGTGTGGCCATTCTACACCTACTGTAGACACTCGTGGGGACCTTCTGCTTCATATACCTCAAAGTTTCACGCTGGACTTATCCTGgatttcattccattcagtgACAAGTTTTATAATATCTGAAACTAAAttctaatattacatttatattatagtaAACATAACTGGAAAGGCAGATTATGAAGAGTGAGATGTGATGTAGCTAAGCAGCCACATTTCAaggaagtataaaaaaaaaaaaaaaaaaactatgtacaCAACATTGATTAAACAAAGATGatgtaaatgtttacaaaaatacagagtatataatatgtgttggaaaataaagatttattgaTAAACAGTGA

Function

GO: NA

KEGG:

id description
K11458 PHC3, EDR3; polyhomeotic-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19186 lncRNA upstream 48029 17281260 ~ 17285830 (+) True G12995
TU19164 lncRNA upstream 60697 17272654 ~ 17273162 (+) True G12977
TU19172 lncRNA upstream 127378 17204414 ~ 17206481 (+) True G12985
TU19173 lncRNA upstream 128636 17204414 ~ 17205223 (+) False G12985
TU19169 lncRNA upstream 143252 17187117 ~ 17190607 (+) True G12982
TU19206 lncRNA downstream 43003 17386062 ~ 17387548 (+) True G13007
TU19304 lncRNA downstream 136665 17479724 ~ 17480102 (+) True G13075
TU19305 lncRNA downstream 137164 17480223 ~ 17480494 (+) True G13076
TU19267 lncRNA downstream 184118 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA downstream 185942 17529001 ~ 17529390 (+) False G13049
XM_043256086.1 mRNA upstream 53466 17276850 ~ 17280393 (+) True gpr160
XM_043217977.1 mRNA upstream 65780 17260811 ~ 17268079 (+) True sec62
XM_043219449.1 mRNA upstream 74111 17253232 ~ 17259748 (+) True samd7
XM_043219458.1 mRNA upstream 74111 17253232 ~ 17259748 (+) False samd7
XM_043218419.1 mRNA upstream 84617 17247935 ~ 17249242 (+) True apoda.2
XM_043262116.1 mRNA downstream 19186 17362245 ~ 17369102 (+) True sppl2
XM_043220234.1 mRNA downstream 130479 17473538 ~ 17478940 (+) True myadmb
XM_043220242.1 mRNA downstream 130528 17473587 ~ 17478940 (+) False myadmb
XM_043223790.1 mRNA downstream 137645 17480704 ~ 17485854 (+) True ftr66
XM_043221436.1 mRNA downstream 158284 17501343 ~ 17506122 (+) True ltb4r2b
TU18915 other upstream 296562 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1065062 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2550882 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2551155 14776322 ~ 14782704 (+) False ackr4a
TU17573 other upstream 3154244 14175364 ~ 14179615 (+) False G11854
XR_006252905.1 other downstream 19186 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 223782 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 264193 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 436280 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 441120 17784179 ~ 17816764 (+) True G13137

Expression Profile