RNA id: XM_043253209.1


Basic Information

Item Value
RNA id XM_043253209.1
length 5260
RNA type mRNA
GC content 0.40
exon number 9
gene id gpc5c
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21929297 ~ 22026087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGAATTCAGTGACACTCTCAGTGAACGGGACGCAGCGGCGCTTTTCCCTTCTCGGTTTGGGAAGGAAGGACTCACTAAAGCCGGTGCAGCATGTGAAAGTCCAGCACAGGCGACtttctcctcttttctttttacacatttcGCAGCCAGTCTCTGACATCAAGCAATTCAACCGCACCGATTTCTCCACTGAAATGCCGTCATGCCACGCGTGAGTGTCAGCTGGATTATTACGGTGCTCGCGGTGGAGCTCGCGACACTGTCCGCCGCGCACGCTCACAGCTGTCACGAGGTGAAAACGGCGTTTCAGGTGCGTCAGATCGGCCAGCTGAAATGGGTGCCGGAAACACCTGCTACAGATGTGGACCTGTCTATATGCAAGCACGCTGGGCCGTCATGTTGTACGAGAAGAATGGAAGAAAGCTACAGAACAGCAGTCCTGAGAGACACCACTCAGAGCATCAGATCATACAGCTTTGAGCTGAAATATCTCATTTCTGCACATATCACCGCCTTTCAGGATACGTTCCAGTCTCTAATCATCTTCTCTCAGAATCACCTGACCTCTTTGTTCGAGACCACGTACTCTTCTCTCATGTCGTCCATCTCCCCTCACATCGTCTGCCTCTTCACGGACCTTTCTCGCTTCCTCCAGGGCACCGGCAACGTTTCTGTTGAAGCTGCCGTCCACTGTTTCTTCGACAGTCTCTTCCCATTGGTCCACACTCGTATTGTCAATCCCGGCATGGCTTTGAGCATCAGCGAGGACTCTTCTGATGCAAACCAGCTCGGCGACTGTCTCCGCATGACGAGGCAGGACGTTAACCCCTTTGGGCCGCACCCAAAGGCAATGGCAGATTCGCTTGCGAGCGCGTTGCGGGCAGGCCGGGTGCTCAGCCTGGCGCTCGGCGTGGGTTTGGAAGTGATGAACGTTACGGATTCGGAGGAGCTGTCCCGGGAATGCAGTCGCGCTTTGGTGCGCATGCATTATTGCTCTCATTGCCGCGGACTCACCCTGATCCGGGCGTGCAGCGGCTACTGTCTAAATGTCATGCGCGGGTGCCTTGCCAGCCTCTCGGAGCTCCACAATCCTTGGAGACAATACGTCACCGTGCTCCGGGATCTCACACACATCGTTGccggagaacacaacctggagCTTGCTTTGCTGGGGATCAGAGGTCAGGTTGAGGAGGCCATACTCTACGCTCAGCTCCACGGGCCCAGGATAACTGCTACGGTGGATAAGGTATGTGGTCACTCTTCGAATGCTTCTTCAACCACAGTCAGGACGTTTCCTCCGACTTCAGTCACGCCTCCACCTGCCAACAGCTCGCAGGACGTTCCAGGAGCCGATAAGATCGGCATGTTGGCGCACCTTCACAGTTCACTCCCACTGAAAACCTCCAAGACCGATAGAAGTAGAACTCTGAAAAAGGTTGCACGGGAGTTTATGGGGTATATCTCCCGGTATAAGTCTTTCTTCTCCATACTTCCGGAGACGTTATGTGAGGGAGAGATGGGCGTTGATGAGCTCACGTGTTGGAGTGGAGATGACGTAGTCAAAAGttaTACTGCAAGAGTGGTTGGTAATGGAGTTCGGGCTCAAAGACAGAATCCAGAAGTAAGGGTCAGAGGTGCTGACCCTGTGCTTATGGATGTCAAAAACAAACTTGAACTCTTCAACATGgaaatccAAGAGATCATGCCTGGTGTGGGTCACAGGGAGTCCTGGGATGAGACAGGAAGTGGAGAGAGCAGCGGTGAATGTGACGATGAGGACGGTTGTGAAGGTTCTGGAAAGTCTGTGGCGTCTCCCAccCTCACAGAAGCTGATGTATCCAAAAAAGCAGCGAAGGTCCCCTTCCACGACTCGCCCATCACTCAGAACACATCTCCATCGGATGCTTCTTTTTCCATGGCCAGCTTCATCGTCATCATTCTCGCTCTGGGGCTGCACTGGCTTTTTATCTGAAAGGCCACAAACGCATACACACGCAGtgatcatacacacacacacacacgggtgaACATCATGAAGAAATGTCAGGGTcttatttcacccaaaaaaccaaaagaaaatgattaatttctctaatttgacattatttaatttacaactgaataatttatttgtggTTTAGCCATTACTCtgttcttcagtgtcacatggtcattcagaaatcattctattattCTGAATTATAAGTGTtggaaacaacaacaataatagatttttaacaATATGCACTATTTCCGAAAATCCGTGGACagtatgctattttttttaccagttaaactgataaaaaatgtGTTAGTGAAGACAttgttataaaagatttctatatataaatgctgctatttaacatttttttcatcatgAATCCACACGTGTCGGAAATATTAAGCACTAAACTCAGCGATTTTAAATTGGCAAAGATTTTTTCAATGAATTAAGATGAATTAGTTCGATTAAGTTATAATCAGACGATTGGTGATGGCACCTCTTCAAATGATGAACGATATGCTACATATTACTAATAAGAAGCAGGATCACTGTAAAATCTGAATAcctgttttagatttttagaagttatagtctttaataaaatattaatcatagTGAAGGTCTCTTTTACTCCTTAGAAGTGCTCACGTACCTATTGAACAGCTTTACAGCTCAGAGTGATTTAATATTCTATAATTTTGCAGCTAGGTCTATATGGCTTGTATGATCGAGTGTAATTACTGTATCTAAATAAATCCCGCACACGGATAAGAattcacacacataaaatgagGGTGTGGATACATAAATAATTGGATTTCTAATATCTGCTGTCACATGgacaaataaattattgatgATAGATTAGAGTgatatctgaaggatcacgtgataCTAAGGACTGGAGTCATAACTAGttcaaattcagctttgccccAACAGGAATAAACTATATTTcaatgtatattaaaacaaaaaatgtgttattttaaatctaaacaataattttaattaattaattaattttaattaattttgtatcaaataaatgcagccctgatGATTAAAAAATCATCACAATGTCATtgtagcaattttttttttcaatgcaggGTACTAAGAATTAGTGGAGggcattgtttaatttttttaataaattacatatatatatatatatgtgtgtgcaaacacatttttttagttcatttcctGTCAGTTCATATGAGTTCACCCAAACTGTACCCCTAAATATTCACATTGCAAGGTCGATTCATTATGTTCACAGCCCCATTTTGTGGAAGACTCCAGCAGGAAGCCTGGCTTTGCCTCAGACTTCTAATATCAGGACAAAACTCTTATCATAACTGACTGGGACTGTGGAATGCATGACAAAATATGTGCATCTGTGGAAACATCTCCCGTGACCACACAACAAAAGGAAAACAGAATCTGTCTGCATAGTAAGCAAAGGATTTTAccatcataaacacacacacacacagagagtatAACTGAATGAAACTATGAATGATATGCACATTGTACTATGTATATAGTTTGAACTGGCGCTGAATTTATAGGACAACGAATGTTTAAGTGTcacacaaacctttttttttttaagatttcttcagctctgactgaaacccacacaaacacatagtTATGATGACATACAGTACATCTTACAAAATATTGGCAATGTTGCTGTTACCTGTTTGCACGACTTTCATAGATTTAAAGGGCTCAAAGCATCCCTTTATTacttaacgttttttttttttaattcctgcaTTTAGCTTCCAAGTGCACAGCTTTTATaagaaaacatacttttaacttaaaaataatagtttattaaacatatttgaaatataccGTGTCATTTGGAGTATACCATGTCAGTGTCATGAGGTTCATATTTACtgaattacatatttaaaattgcaCTAAATTTgctttattctaaaaaaaaaaaaaaaagttttttttttccctcaaaagTGTGGTACAGTTTTGCGTGAATGTTGtcatgtttaatgaaaaaggaaaaaaagaaaaaaatcacagataTGCAGAATgcctttcttttataaaaaatgaacttaaagCAAAGCAATGCAAGATGTTTAGAGATaccaaatattttctataatagCTTCTTTAGCGATCTGTTCATagcaacataaaaacatttatttcctaTTATATGTTAACATTTAAGAGTCAGTATTAAAACATTGCTATAGTTCTTACACAGAAGCAAAGAGGGTCTAATGAgtctgtaaacatttttaatgtttatgcgttttctttttgttgttgttgttgtagttgcTGTGTCTGATTGCACATGAATTGCTACATTTGATTTGCCTCATGTATCTCTGATGTTGGttctataatgtttttatatgaacGTTCACGAATCTTCATACATTCGTACATTTGCAGGCCGTCCATTTCTCCTCCGATAACATGCATACAACTACAGGGTGCGAATTACAGGGGTTTAAAGCCCACAAATTAGAGACAGGACGAGTCTCAGGATGAGCGGTTGCTTTTATCTGATTGGTTTCTATTAGGTCCAGTTTGGGGTTGTACTTTGGCATGTCATGTCATTATCACTTCATTATAACACATATCGCAAATGTGTCAAAAAGTTTCTAATTTCCTTTAAACaggttttattatagtaaactGCTGTCTAATATCTTCTGCAATATCAGTGGGGTTGCATGATAATTTTAgaataatccaaaaaaaatgcaaaacttttattatttaatcaccTTCAcccttgttaaaaaaatgcagaataaagttTCGAAAGACATCAGGGTCAATACATGACAAGATttccattttggggtgaattgtttctttaatattGCACTCTACAATGTATCTATAAAGattcctttatttaaaaataaatgctgttgaagGTCTGTAGTTCGCACCCTGAATAGTTACTCAATGCCATGCAAAgccaatgtttttttacatttaatgtttgttcCAAACTGTCATTTCTGAGTATGACTGTAAAATGGATTGTGATTACAgcttgtttgctgtgtttttaattttcattttcattttttttttcgttcatgGTTTGCTTGGTACAGTTGAACACGTATGGCTCAGCGAATGAAGCTACTGAAAAACTATCAAATATACACAGCGCATATAAAAAGTTGGTTAAACTGGTTAACTAAAGCTAATAAAATGATTCTCTGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21389 lncRNA upstream 14269 21913520 ~ 21915028 (+) False G14484
TU21388 lncRNA upstream 14330 21913520 ~ 21914967 (+) True G14484
TU21376 lncRNA upstream 33819 21895171 ~ 21895478 (+) True G14477
TU21375 lncRNA upstream 34166 21894608 ~ 21895131 (+) True G14476
TU21373 lncRNA upstream 62458 21865738 ~ 21866839 (+) False fndc7a
TU21457 lncRNA downstream 436947 22463034 ~ 22463853 (+) False LOC122327302
TU21455 lncRNA downstream 441773 22467860 ~ 22472603 (+) True G14532
TU21458 lncRNA downstream 449694 22475781 ~ 22476202 (+) True G14535
TU21471 lncRNA downstream 486084 22512171 ~ 22513937 (+) True G14540
TU21474 lncRNA downstream 496324 22522411 ~ 22576292 (+) True G14541
XM_043222546.1 mRNA upstream 17628 21896676 ~ 21911669 (+) True fndc7rs1
XM_043219847.1 mRNA upstream 61898 21857212 ~ 21867399 (+) True fndc7a
XM_043222534.1 mRNA upstream 76290 21843575 ~ 21853007 (+) True LOC122327294
XM_043259004.1 mRNA upstream 102065 21818882 ~ 21827232 (+) True nlrp1
XM_043259049.1 mRNA upstream 110135 21815200 ~ 21819162 (+) True LOC122358999
XM_043263870.1 mRNA downstream 18781 22044868 ~ 22105101 (+) True gpc1b
XM_043218532.1 mRNA downstream 108267 22134354 ~ 22326172 (+) True LOC122324242
XM_043222559.1 mRNA downstream 435829 22461916 ~ 22485655 (+) True LOC122327302
XM_043260236.1 mRNA downstream 489318 22515405 ~ 22549867 (+) False epb41l3b
XM_043260198.1 mRNA downstream 489489 22515576 ~ 22549867 (+) True epb41l3b
unassigned_transcript_253 other upstream 478 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 67855 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 213010 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 446979 21481676 ~ 21482318 (+) False LOC122354659
TU21007 other upstream 567589 21337682 ~ 21361708 (+) True G14211
TU21525 other downstream 665164 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1519019 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1710964 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1909834 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 2057751 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile