RNA id: XM_043253272.1


Basic Information

Item Value
RNA id XM_043253272.1
length 3299
RNA type mRNA
GC content 0.57
exon number 11
gene id dlgap1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13835218 ~ 13892685 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGTCAGGCTGGTGTGGAGTTTTGTAACAAAAGGATTCCTGTGTGCACTGGAATATATCAGCCGAAAATGAGGAACTGTTGAGCACCGTCAGGTAATTTTGGATCCGTACTGTGCGTGGATGCCTCCGACCCTCGCTGGATGATTCCATCTCTGTGATGAAAGGCTTATCCAGCAGCCGCAGCCACCACCACGTGGTGACCTGTGACCCCTCTTTTGACTCCATGGGTCACCACTTGGACCACAAGCCCTACCTCATCAGCCAGATCGACAACCCCCACCCGGTCGACCACTCTTACTACTCCCAGAGAAGCCCCTACCAGCCCGACTGCGTGGTGCCTTATGGGACCTTCCCCCGCCGACACTACAGCTCTCAGCATGAGCTGAAGGATGAGACCGCTGTGGTTCCCTACACCGGGGGAGGGGTTCCAGCCAACAAGGGTCAACAGCGTCTCCCTGTCGCCCTGTTGGATCAGTTCGACCGGCAACTCCCAGTGCCTCGGGACGGCTATCACACGCTGCAGTACAAGCGTGCCGGCGCAGCCTTGGAGCAACGGAGCGACAGCCCTGGCCGAAGTCGGCACCTGGTGCACTCCGTTCAGAAGCTCTTCACTAAGTCCCACTCACTAGAGGGCCCACACCATGGTCACGGCCACGGCAAGGGCAGCATCAACGGAGGGAAGGCAAGCCCCGACGGAGAACCCCCTGCTATTCGGCACCGCAAGCGCAGCAAGAGCCGAGAGCGCTGCAAGTCGGCTGAACCCAAGAACAGGACACCACCTTCTGGCTACTGGAGTTCGGATGAATTGGAACGTGAGGCCTGCCTGTTTCACCATGGACCACCAGGCGTCATGACCATGGGCCGTCACCCGGATAAGTCGCAGTCGCAGTACTTCTTGGAAGCCTACAACACCATCAATGACCAGGCACTTAAAAACTCCCGCAGCAGCAATGATTTGGGCAAGTGCTCGACGTGCACGAGCATCCCGCTGAGCGTGGACGCGTCACAGCTCGTGAAGAAGAGCTCGTGGTCGTCCTCTCTCACGGTGAGCAGAGCACGTCAAGTCTACCAGAAGGCCTCAGTAAATGTAGATAAGGCTCTAGTGAAAGCAGAGGCTTGTCAGCAGGAGCGCTCATGCCAATTCTTGCAGGTCCCTCAAGACGAGTGGGGAGGCTTTCCACTGGGGAAAGATGAGGATATCCCGTGCAGACGCATGCGCAGCGGGAGTTACGTGAAAGCCATGGCGGAGGATGACAGCGGAGACTCGGACGGCAGCCCTAAACCCTCGCCCAAGATGCAGGCACGACGGGCCAGCTACCTCAAAGCCACCCAGCCATCACTCACAGAGATGACCACTCTAAATATCTCCACAGAACATTCTCCAAAGCTGCAGATCCGGAGTCACAGCTACTTGCGGGCGGTGAGTGAAGTTTCCATCAATAGGAGCCTGGACACCCTGGATCCCAAAGCTCTGCTAGCCTCTCCCCAATACCGCTCACGCAACGAGAGCTACATGAGGGCTATGAGCACCATCAGCCAGGTGAGTGAGGTTGAGGTTAACGGGCAGATCGAggcagtgtgtgagagtgtgttcaGTGAAATGGAGTCACAGGCGGTGGACGCCCTGGACCTGCCCATGCCCGGGTGCTTCCGCATGAGGAGTCATAGTTACGTGCGCGCCATCGACCAGGGCTGCTCGCAGGACGACGACGGGCCTTTGCTCCCTGCCTCCCCCCCGAGGACCACCACTACTGTCAGAACCATCCAGAGCAGCACAGTATCATCATGTATCACCACCTACAAGAAGACTCCTCCACCTGTACCTCCTCGCACCTCCACCAAGCCCTTCATCTCCATCACGGCCCAGAGCAGCACAGAATCCGCGCAGGACGCTTACATGGACGCCGGGACGCGGGGGGAACCCGTCCTCCACTCTGGCCTGAGCAATTCCACCGAGAGCATCGATAGCATGAAAGCGCTGACGGCAGCCATCGAGGCGGCCAACGCTCAGATCCACGGCCCTGCCAGTCAACACGTCAGCAACAGCACCATCACCATCAGCACCACCCCTCCCTCTCCGCTGCCCATGCCCATACCTATGACCATGCCCATGCCTATGACCATGCCCATGCCCATGCCCATGCCCGTCCCTGTCCCCATACCCATCCCTGCCCTGGAAGACGTCCGCAGGGATGTGCTCAGGAAGAGCAGGTGCCTTTCTATCGGCATCCAGGTGGATGGGCCTGAGGACCAGGAGCTGGAGGACCAGTCCAAGTTTCAGTCAGTGGGGATTCAGGTTGAAGAAGAGCACGgTCACCGGCGGTTCAAGCGTTCGAACAGCGTGACGACAGCGGTGCAGGCTGATCTGGACACTCCGGACTACACACCAGCCGACTCTCCTGTCACAGATTTCCCCTCCTCGGGCTGCTTGTCACGGCAGTACTCACGTGATGCCGCCACCTCCACCGTCAGCATCCAGGGCTCAGGGAATCACTACCACGCCTGCACCTCAGATGACTACGAGGATGTCGGCTTCGATCCCTCCATCCTTCCTCCACCTGACCCTTGGATCGATAGCGTAACGGAAGATCCCCTGGAAGTCGTGGGCCGCTCGGTGTGTCAGCGTGACGGCCGCTGGTTCCTGAAGCTGCTGCAGGCGGAGACTGAACGCATGGAGGGCTGGTGCAGGCAGATGGAGCACGACGAGAAGGAGAACAAGCTACCTGATGACGTCCTGGGGAAGATCCGCAGTGCGGTGGGAAGCGCACAGCTGCTCATGTCCCAGAAGTTTCAGCAGTTCAGGGAACTGTGTGAGGAAAATCTTAACCCAAACGCTCACCCACGGCCAGTGGCTCAAGATCTCGCAGGTTTCTGGGACATGCTTCAGCTTTCCATCGAGAATATCAGCTTAAAGTTCGATGAGCTTCACCAGCTCAAAGCCAACAACTGGAGACCCCTCGACCCCCCTGAGAGAAAGGTACAACAAACTTGCAGAATCAGTACAGAGTCGTTGACAAAAGAAGAATTAGAATGCAGACATGCTAGCTGCCTGATTGCAGGACaacgttgtgttttttttttattattattattcatgtgcaTGATCTGTTGCTTCTGTAGTGTGATATTATTCATTCAAGGGTGGGCACTGGCAATAACAAACCTCCAAAATCAGCTGTTGCTGTTGCCTCCCTGTGGCTCATGTCGGTCTGTTGGTCTAATGTGACTGTGAATGTTTCACTCACTCTTAATTTGCTGACATCCTCttcatgtttgctttgtttgtttgtttgtttgtt

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K15008 DLGAP1, GKAP; discs, large-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17458 lncRNA upstream 133892 13694319 ~ 13701326 (+) True G11779
TU17386 lncRNA upstream 368257 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA upstream 368257 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA upstream 368257 13315229 ~ 13466961 (+) True G11740
TU17383 lncRNA upstream 368257 13464514 ~ 13466961 (+) False G11740
TU17503 lncRNA downstream 11883 13904568 ~ 13917191 (+) True G11812
TU17521 lncRNA downstream 102106 13994791 ~ 13995373 (+) True G11823
TU17513 lncRNA downstream 109860 14002545 ~ 14068095 (+) True G11820
TU17543 lncRNA downstream 156032 14048717 ~ 14051620 (+) True G11836
XR_006252504.1 lncRNA downstream 198879 14091564 ~ 14098847 (+) True LOC122357607
XM_043222213.1 mRNA upstream 412055 13411296 ~ 13423163 (+) True LOC122326989
XM_043263883.1 mRNA upstream 537073 13259743 ~ 13298145 (+) True cdh18a
XM_043254324.1 mRNA upstream 622092 13174143 ~ 13213126 (+) True cdh12a
XM_043253826.1 mRNA upstream 688419 13127411 ~ 13146799 (+) True cdh10a
XM_043256894.1 mRNA upstream 930277 12903132 ~ 12904941 (+) True mc4r
XM_043219234.1 mRNA downstream 10225 13902910 ~ 13904250 (+) True ptf1a
XM_043216932.1 mRNA downstream 46585 13939270 ~ 13990501 (+) True si:ch211-207d6.2
XM_043216938.1 mRNA downstream 58648 13951333 ~ 13992324 (+) False si:ch211-207d6.2
XM_043216945.1 mRNA downstream 73112 13965797 ~ 13992324 (+) False si:ch211-207d6.2
XM_043220658.1 mRNA downstream 116398 14009083 ~ 14015895 (+) True htr5aa
TU17265 other upstream 962073 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 962133 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1208831 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 1553714 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 1554559 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 282679 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 282679 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 883637 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 883637 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 2374358 16267043 ~ 16268797 (+) True G12531

Expression Profile