RNA id: XM_043253555.1


Basic Information

Item Value
RNA id XM_043253555.1
length 1787
RNA type mRNA
GC content 0.46
exon number 9
gene id rabggtb
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12261916 ~ 12266122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGAAACGGCGAAGAGCGTGATgatgtaatatgtgtgtgacTGGTGAAGTCAGCCTGTAGTCCACTCTCTTGTTTCTCCGTCAGGATGgGGACCCAGGTTAAAGACGTTATCATTAAACCTGATGCTCCAAACACGCTCATCCTAGACAAGCATGCAGATTATATTGCAGCCTATGGCTCCAAGAAAGATGACTATGAGTACACGCTGTCAGAGTACTTGAGAATGAGTGGCATCTACTGGGGTCTGACAGTGATGGATCTGATGGGTCAGCTGTCTCGAATGAACCGCGAGGAGATCATAGAGTTCATCACGTCTTGCCAGCATGACTGTGGAGGCATCAGCGCCAGCATTGGCCATGACCCTCATCTCCTCTACACCCTCAGTGCTGTACAGATCCTGTCGTTGTATGATAGCGTTAATGTCATTGATGTGGACAAAGTGGTGGACTATGTTAAAGGACTGCAGCAGGAGGACGGCTCATTCGCCGGAGACAAATGGGGAGAAATAGACACACGGTTTTCCTTTTGTGCGGTTGCGACATTGGCACTACTGGGCAAGTTGAATGAGATCAACGTGGACAAGGCTGTTGAGTTTGTGCTGTCCTGTATGAACTTCGATGGTGGGTTTGGTTGTAGGCCTGGTTCAGAGTCCCATGCTGGCCAGATTTACTGCTGCACAGGTTTCTTATCGGTCACTGGGCAGCTTCATCAAGTAAATGCAGATCTGTTGGGTTGGTGGCTCTGTGAAAGACAGTTACCATCGGGGGGCTTGAATGGGAGACCAGAGAAGCTGCCTGATGTCTGCTATTCCTGGTGGGTTCTTGCCTCTTTGAAGATCATTGGCAGAATTCACTGGATTGACAAAGCAAAACTGCGCAGTTTCATTCTCGCTTGCCAGGATGAAGAGACTGGAGGCTTCGCTGACAGGCCTGGAGACATGGTGGATCCTTTCCACACTCTGTTCGGTGTGGCTGGTCTGTCTTTGCTGGGAGATGAGCAGATCAAACCAGTGAATCCTGTGTTTTGCATGCCTGAGGATGTGCTTCAGAGGATCGGCCTCCAACCGGACTTGCTGAGTTGAAATCTTCAGCATGGCCTTTTTCCTCTTCTCCTACCCCTGCACAGCCGGCCGTTTGGAAACGGGCAAACCAGCAAACCGTGGAAAGCTGTCATCTTCAACTAATGATCAGTGCACCATTTAGAGGGACCAAGGACTTTAGAAAGGCCCTTAACATTGTGTGCTTTTTTGCGGGAGAATTGTTCTCATCATTGTGTAGGCACAATAGTACAATGCTTACTTTTGTTAGTGGGCTTTCTCTATTTAAAGATGCGGCTCAAAGAGGAATATCTGCTATTTACAGCTTTCACTGTGTATTAAAACATAACTATTTATATGACTAATTCAGCAGGTCACTTTTGGTGTCaaccaaaagtgttttttcaaTGAGGAGAGAGGTTGCTCACTCATCTCTGATGGCTTTTCCAAAGCTAGTACGCGAGACTAATACATGTATGTTATATCAGACTTCAAGCACCATAAACATGGATTTCATGCATGAGATTAATTTTGATGTCCTCTTACTGTCGTTTGTTCACATCAAGTCCTCACTTctctaaagcatttattgtgcaaccattttaaaagtcatgctCTGCAACTGCTGTCATTTCTAAGGTTTGGGAGAGTTTTGCTTTTGTGGTATGAATGAAATCTCTCACTCGGCATTGACACCAGTGTGTAAAGATGCCTGTTGTTTGGGAGTGaataaatgtgactttaatATAA

Function

GO:

id name namespace
GO:0018344 protein geranylgeranylation biological_process
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16955 lncRNA downstream 225487 12035009 ~ 12036429 (-) True G11429
TU16950 lncRNA downstream 228836 11943133 ~ 12033080 (-) False G11425
TU16949 lncRNA downstream 228836 12031828 ~ 12033080 (-) True G11425
TU16951 lncRNA downstream 230191 12028135 ~ 12031725 (-) True G11426
TU16874 lncRNA downstream 442117 11817020 ~ 11819799 (-) True G11366
TU17110 lncRNA upstream 5621 12271743 ~ 12272390 (-) True G11549
TU17112 lncRNA upstream 13636 12279758 ~ 12281210 (-) True G11551
TU17114 lncRNA upstream 13636 12279758 ~ 12281210 (-) False G11551
TU17119 lncRNA upstream 13636 12279758 ~ 12281210 (-) False G11551
TU17140 lncRNA upstream 73154 12339276 ~ 12359064 (-) True G11565
XM_043218296.1 mRNA downstream 167335 12092365 ~ 12094581 (-) True cldn11a
XM_043219166.1 mRNA downstream 357958 11901080 ~ 11903958 (-) True ghsra
XM_043253700.1 mRNA downstream 567438 11691551 ~ 11694478 (-) True nceh1a
XM_043262837.1 mRNA downstream 576857 11679913 ~ 11685059 (-) True pccb
XM_043255143.1 mRNA downstream 630116 11628145 ~ 11631800 (-) True slc35g2a
XM_043262127.1 mRNA upstream 963 12267085 ~ 12270472 (-) True acadm
XM_043219208.1 mRNA upstream 15960 12282082 ~ 12286011 (-) True best4
XM_043224103.1 mRNA upstream 21303 12287425 ~ 12292955 (-) True si:ch211-106k21.5
XM_043224084.1 mRNA upstream 27226 12293348 ~ 12319104 (-) False LOC122328397
XM_043224091.1 mRNA upstream 27226 12293348 ~ 12319104 (-) False LOC122328397
TU16802 other downstream 684400 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 808996 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 812493 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 816803 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 856219 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 1287730 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 1287730 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 1287730 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 1293100 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 1294207 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile