RNA id: XM_043253597.1


Basic Information

Item Value
RNA id XM_043253597.1
length 897
RNA type mRNA
GC content 0.46
exon number 5
gene id thap4
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10046848 ~ 10049106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacaattcCTAGTGTCTAATCAGGAAGTAGGCACGTACTGATGGTAAACAGATAGTAGTTCAACCGCAGTgtaattaaattgataaaattcGTGGTTACTTGAAAGTATTCCAGCGGAATGTCATGCCCATTCAGTCATTCTGCGGAGCTGAACCCCGCAGTGCTGCCGCTGGACTGGCTGCTGGGCACCTGGCAGTCCGATGAGCCGGGAGAGGGGTCCTTCCCCTCCATCACGCCTTTTCGTTACACAGAGACTCTTCATTTCTCACACGTAGGACAGCCTGTGATCAATTTTATgttCAATGCATTCCATGCTGAGAGCAAAAAGCCACTTCACAGGGAGTGTGGGTTCATCAGGATTCAGCCAGGCACCAACAGGGTGGCCTTTATCATCGCACAGAACTCAGGTCTCGTGGAGATTGAGGAGGGGGAGCTCACCGGACAGCAGCTGACTCTGCACAGCACTGCCCTGGCTAGAACATCTTTTGCCAAGCAGCCTTACGTTCAACAGATCTCCAGGCATATCCAGCTGAAGCCTGATGGAAGGCTGGAACAGACCATCTCTATGGCACTTGAAGGACAGCCTCTGACGCAGCATTTGCACATCACTTACCGCAGGACGGATTAACCGGCTGTCACGTGGGTGGAAAGACGTGTTTGTGAAAAGCACTTGTACTAATGTACTTATTTGACACACAATATTGATGGTTGATGTATAGAAACCTGCGGGTGATGGTAATGTATCTGTGAGTAACAATGTTATCTAAAGTAATAGACGTGATCTGACCTGTCTCCCCAACAAAACAAGCGttgcaaatattattgcaatatattaaGGGGTCATTTTTGTATAATGTATagcaactaaaataataaacgtGAAATTGTCTTTTCAAA

Function

GO: NA

KEGG:

id description
K23205 THAP4; THAP domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15980 lncRNA upstream 31026 10014559 ~ 10015822 (+) True G10753
TU15979 lncRNA upstream 32482 10011937 ~ 10014366 (+) True G10752
TU15953 lncRNA upstream 36102 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA upstream 53453 9992784 ~ 9993395 (+) True G10749
TU15857 lncRNA upstream 220628 9825615 ~ 9826220 (+) True G10674
TU16060 lncRNA downstream 9426 10058532 ~ 10063814 (+) True G10819
TU16087 lncRNA downstream 92236 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 109447 10158553 ~ 10161809 (+) True selenof
TU16166 lncRNA downstream 160457 10209563 ~ 10209851 (+) True G10883
TU16203 lncRNA downstream 342563 10391669 ~ 10391956 (+) True G10902
XM_043219759.1 mRNA upstream 5995 10036539 ~ 10040853 (+) True agxtb
XM_043224123.1 mRNA upstream 85373 9942861 ~ 9961475 (+) True myo7bb
XM_043221924.1 mRNA upstream 106101 9928426 ~ 9940747 (+) True sap130b
XM_043221385.1 mRNA upstream 119604 9917365 ~ 9927244 (+) True mllt1b
XM_043224595.1 mRNA downstream 6859 10055965 ~ 10061716 (+) True stk25b
XM_043219487.1 mRNA downstream 26051 10075157 ~ 10077334 (+) True LOC122324805
XM_043224583.1 mRNA downstream 29294 10078400 ~ 10079945 (+) True cldn18
XM_043258511.1 mRNA downstream 47303 10096409 ~ 10107424 (+) False znf644a
XM_043258504.1 mRNA downstream 47315 10096421 ~ 10107424 (+) True znf644a
XR_006247735.1 other upstream 129987 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 131357 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 295636 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 874933 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1939071 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 662024 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1191020 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1290757 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1447254 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1447254 11496360 ~ 11498937 (+) False mast3a

Expression Profile