RNA id: XM_043253712.1


Basic Information

Item Value
RNA id XM_043253712.1
length 2458
RNA type mRNA
GC content 0.49
exon number 3
gene id scg2b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23530770 ~ 23533357 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTTTAAAAACATGTTGTGTTCTGACTGATCTCATTGCTGCTCTGGCGCTCGGAGCGTCTCTTCTTCTCGCTCTGGGAAACAATTTTAACAACTCTAAGAACTGATTTCATGGGCGGTATGATGTTGTCGCTACCGAAACTGTCCGCCAGACTTGTGGCGGTCCTGCTCGTTACCCTCCTCCAAACGCTAACAGTGCAGGGCGCTTCTGTGCGCCACCATCGCCTGCGAGGCGGAGACCAGGGTGGCTTCCTTGCTCCCAGCTCCGATATGATCAAAGCTCTGGAGTACATCGAAAGCTTGAAGCAGAGAGCCGATGGACCAGAGAGTCCAACAGGGGACTACGATGAGGTGGACAAATTCCGTTTTCTAGTGCAGCTCGCCTCCCTACAGGACGAGAACACGCCCGCGCGTGAGGACGCCACCCGTTGGCCTGATAACAAGGTGCCTCAGTGGGTTCGATCTCTGCTGCGGGTGCTCGAACAAGCTGGAGAGACTCCGGAAAGTCAGCCTGCGCCCGGAAACGAGCGGCGTGCTCACAAGAGCAGACGCCCGATGGCAGACGCAGAGAGTCCAGTTGGAGACTATGGAGGCTTCGTGAAGCCACACAAGAAGTACCCGCTGATGTTCGAGGATGAGGAGAACGGCAGGGATAACAAGCGGGCGACTGAGGATTTGGACGAGCAGTACACCCCTCAGAGCCTAGCAAACATGCGCTCTATATTCGAAGAGCTTGGTAAACTGTCTGCCGCGGCAGAAAGAAGCTTAGATAACCAGGAAGATGAAGACGGAGAAGATGCCGATGACCTCTACAAGGTTAGAAACCTGGCTTACGAGGATGTGGCCGGAGGGGAGGAATGGGTGCCGCTAGAAGAGCAGCTCGAGACGGAGGAAGTAGTTAAAGGAAGTCGTGAAGAATACGAACGAGGGCTAGGAGATAACGGAGAGCTGGCCGAGGCCATTGAAAGACGAGCTGCCGAAGACGATGACGAGAACCCAGACGATGACACAAAACTTGTGGATTACTACCTGTTGAAGGTCTTGGAGATGACAAACCAGGCACAAAAACGAGACCTGGAAGGAAGGAGGAGGCTACTGTCCCAACCCTCTCTAATCGACCCTCGGGCAATCAAACAACTGCTGTCAGCTATTTCAATGAAGCTCCAGGTGCCTCCAGAGGACCTGGTTGGAATGCTCTTCATGGAGGAAACCAGAAAACAACAACGCCTTCCTGAGCCCCAGCTAGCTAGGAAGCCCAGCCAACCTCGGTACAAGAGCCGGGTCATCAAGTATTACAACGGTCGTCAGCCTGAGGTCACAGTGAGCGATATCCCTCCAGATGTCAAGACTGAGGATATCCTGAAAGTGCTTGGGTTAGGGAATCTGGCCAATAAGAACACTAAATTTTCTTTGCTAAAGCAAAGGCCCTACAAGACAGCCATGGCAAAGTACTTCAACCCCAGCGGAAGACGGGGAAGCTTGTTCCTGTCCGAGTTAAACAAAGCTCCAAGCAAAAGAAAAGATGATTATGACGATGACGCAGTGGACGAGGATGAAGAGTCGACCTTCCTCGCAGCCAAACTCCTGACCGAGTACCCCGATACCAGCTCGAGCGACCGCAAGAGAGCCGTCGATTCCACCACGAATGGACAGCTGCCTTATGAGCTATACGAGGAGGCCATGAAAGATTTCTTTGATCAGGTTGATAATGGAAAAAGCACGCCCACCAAAAGAGACACCCAAGGGAAAGAGGAGCCCGAGGCGCCCCAAAAGCCGCCCGCTCAAGATTCAGCACAGGAGACCGTAGATCAAACCCCACCTGTGCCTGGAACAGAAGAGGGTAAAGAGTATCACGGGAAAATGGTTGCAGGAATGTGAAGACCccaagcttgttttttttccccctgataATATTCCGACAAGTCCCGCCCCTTGACCTTTTATCTCTTTGATACAGTTGCCATGGCTACATGAACAACTTCTGAACTGCCCAAATTGCAAACCGGTTGTAAGAAGCTCCTACTAGCCAATCCACAGAAGGGACTTGTCAGAGTATGaaaggggtaaaaaaaaaaatacaaaataaaaatactgcttACTCGTGGGACATGCCTATATCTCctcaaaagttattttaaaaaaagtaaacagtttGAAGTGCTTTAGTTTTCATGGAATTCTAtatgatgtaaatatatatggtatatCAATGTGCGGGAGTTCAAGTGTATTTTATCTGTCGTTTATGAATTGGTGGTCCTCGAAATGTTTTCTTGTTCCTTTTGTCGGTATCAAGAGAATATTCCTGTAGTCGTAGGACTCCGCTTGCTGCAATCTTTACAAGCTATTTCATTATCAAACCAATAAAGATGGATGTGATtctcatttataaatcattttgtacGTGTTCTAAAGTGTGAGAAGAGAAACATGAATAAAGCATTACCGTATTATTTTTC

Function

GO:

id name namespace
GO:0030141 secretory granule cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21844 lncRNA upstream 349613 23180731 ~ 23181157 (+) True G14779
TU21843 lncRNA upstream 351015 23179445 ~ 23179755 (+) True G14778
TU21837 lncRNA upstream 351639 23158098 ~ 23179131 (+) True G14772
TU21593 lncRNA upstream 480798 23046633 ~ 23049972 (+) True G14611
TU21589 lncRNA upstream 500891 23029167 ~ 23029879 (+) True G14607
TU21979 lncRNA downstream 17248 23550605 ~ 23553233 (+) True G14832
TU21987 lncRNA downstream 24892 23558249 ~ 23562352 (+) True G14837
XR_006252160.1 lncRNA downstream 109106 23642463 ~ 23643525 (+) True LOC122355031
TU22004 lncRNA downstream 109655 23643012 ~ 23643550 (+) False LOC122355031
TU22015 lncRNA downstream 135206 23668563 ~ 23683398 (+) True G14850
XM_043222059.1 mRNA upstream 88069 23424694 ~ 23442701 (+) True wu:fb63a08
XM_043222658.1 mRNA upstream 270296 23250192 ~ 23260474 (+) True LOC122327352
XM_043220303.1 mRNA upstream 505375 23018357 ~ 23025395 (+) True LOC122325295
XM_043219036.1 mRNA upstream 514290 23005897 ~ 23016480 (+) False mbd3a
XM_043219030.1 mRNA upstream 514290 23005927 ~ 23016480 (+) True mbd3a
XM_043252984.1 mRNA downstream 30407 23563764 ~ 23624866 (+) False mbnl1
XM_043252987.1 mRNA downstream 39741 23573098 ~ 23624866 (+) False mbnl1
XM_043252985.1 mRNA downstream 42751 23576108 ~ 23624866 (+) False mbnl1
XM_043252983.1 mRNA downstream 50854 23584211 ~ 23624866 (+) True mbnl1
XM_043252981.1 mRNA downstream 50854 23584211 ~ 23624866 (+) False mbnl1
TU21525 other upstream 835440 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1601951 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1669328 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 1814483 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 2048452 21481676 ~ 21482318 (+) False LOC122354659
TU21973 other downstream 11749 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 203694 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 402564 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 550481 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 960081 24493438 ~ 24499685 (+) True G15065

Expression Profile