RNA id: XM_043253811.1


Basic Information

Item Value
RNA id XM_043253811.1
length 1385
RNA type mRNA
GC content 0.51
exon number 2
gene id cavin4a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20568457 ~ 20571921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGTTTGTCAGATTCCGCTGGGGTCTCTCTTTTGGAGTGTCGGTTTCTCTCTGTACTGTGTGTTTGATTCCCGTCTGGCCCTTTACCCATCTCTGGCCCGGCAGCTTTACTTTCAGGGACGTGTGACAGGGAGAATCGGAGATGGAAAAGAGAGGAGACGTAATGCTGGGGGTCGAGGATGAATCTGGACAGCCCGTCTCGGCCTTGTCGATTCTGTCTCTACTGGAACGCGTGTCCACGATCATCGATGGCGTTCAGGCCAGCCAGCAGCGCATGGAGGAGCGACAGCAGCAGCTCGAAAGCTCGGTGAGCGCCGTCCAATCCGAGCTTCTCAAACTAGCGCGTGACCATGGCGCCACGGCCACGACCGTTGACAAACTGCTCCAGAAAGCCCGTCGCGTGAGCGCCCACGTTAAAGAAGTACGTTCCCGCGTGGAGAAACAAAACGTGCGCGTGAAGAAAGTGGAAACTACACAAGATGAGCTGCTCACCCGCAACAAATTCAGGGTTGTCATCTACCAGGGTGAAACTGAAGTGCCCTCTGTTGCTGTCACCAAGACTCCTAAAGGGGAGGGGCTTGCTAACTTGGAGGTGGAGCCAGATGAGTATGAAATCCCTGCTGACCTGTCATCCGATGAAGAGTACATGGTGGTAGAGGAGGCGGAGTCTTCCCGGGGTGCCCGTCTGAAACAAAGCGGGTTAAAAGGCATTGAGaacatcaaagctgcattttccaaAGAGAGCATGAGCAAGACCCGAGAGAAGACGCGAGAAAACCTCAGCAAGACCAAGGAGAGCCTTAGTAAGACGGGCCAGACGCTCGGAACCAAATTCAACACCTTGGGGGAGAAGATCGTGCCCCCTGAGCAGCGAGAGAAGATCCGTCAGAGCAGCGAGAGGCTGAAGGAGAACATCGCTAAGAAAGCACCCAATAAAGAATCGTTCAAaatcaagctgaagaaggagcgTACGGTCGCTGAGGGCCAGGAGGGAGCAGATGCGGAGCCTGCTGTGACTCCTCCCAAAGGCAGGAAGTCTAGCCCAGATGTGACCTACACAGAGGTGGTTACCGAGAACAAGAGGGAAGGTCCAGTATCAGAAGAGGGAGCAACTCGTATCCAAGAGGACTGAAAACAGCAGTTCACCACAGAAACTGTGGGGAATTGGAAAGAAAAAGTATATAGAATGCAGAGAAAGAAAGTAGTTATTTAGAAAGAGGAATAAAGGttgatttttcataaaaaaatgtgctcCAATGTGAGAGTGtatgagaatgtgtgtgttggGTAGCTAAATTAATGAAAGAGTTCAAGCACTAGATGTGTTTGTATCATTTCTGTTACCGTAAGCCAcatgtgaaatatattaaaatgtgaaaatgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20494 lncRNA upstream 35719 20532212 ~ 20532738 (+) True G13896
TU20474 lncRNA upstream 65118 20492928 ~ 20503339 (+) False G13880
TU20475 lncRNA upstream 65118 20501795 ~ 20503339 (+) False G13880
TU20481 lncRNA upstream 77544 20490111 ~ 20490913 (+) True G13884
TU20480 lncRNA upstream 81587 20486489 ~ 20486870 (+) True G13883
TU20455 lncRNA downstream 19797 20591718 ~ 20595093 (+) False G13863
TU20456 lncRNA downstream 19797 20591718 ~ 20595093 (+) True G13863
TU20511 lncRNA downstream 44237 20616158 ~ 20617660 (+) True G13909
TU20595 lncRNA downstream 327643 20899564 ~ 20946266 (+) True G13964
TU20620 lncRNA downstream 384014 20955935 ~ 20957136 (+) True G13980
XM_043253796.1 mRNA upstream 496 20562914 ~ 20567961 (+) True tmeff1a
XM_043253782.1 mRNA upstream 12462 20549943 ~ 20555995 (+) True LOC122355454
XM_043253768.1 mRNA upstream 20954 20543826 ~ 20547503 (+) True LOC122355453
XM_043258304.1 mRNA upstream 28903 20537537 ~ 20539554 (+) True LOC122358486
XM_043258235.1 mRNA upstream 41059 20519909 ~ 20527398 (+) True vcpip1
XM_043254491.1 mRNA downstream 826 20572747 ~ 20577649 (+) True ift57
XM_043257696.1 mRNA downstream 6505 20578426 ~ 20588575 (+) True tmem71
XM_043260707.1 mRNA downstream 24411 20596332 ~ 20605933 (+) False LOC122360253
XM_043260698.1 mRNA downstream 24426 20596347 ~ 20602061 (+) True LOC122360253
XM_043257555.1 mRNA downstream 135043 20706964 ~ 20712152 (+) True march11
TU20478 other upstream 64234 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 83239 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 95841 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 139112 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 2751693 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 592021 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 592376 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 735486 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 765761 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 765761 21337682 ~ 21361708 (+) False G14211

Expression Profile