RNA id: XM_043253826.1


Basic Information

Item Value
RNA id XM_043253826.1
length 4546
RNA type mRNA
GC content 0.43
exon number 12
gene id cdh10a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13127411 ~ 13146799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agggagggagagagagagaggcagctGGAGTCTCACACACAACTGTAGTCAGTCTTGGAATCTGAGCGCTGCCAAGAGGCGAGTACAGAAGCCAGCGTCGTACTTCCATGAGGATGACATGCTCTCAGAAGAGCACAGGAGTCTGTTTTGTTAAGgGAATCAAAGGAGGATCAAAGGCGATTCTACAATGTCAGGGTTGCTGATGTTGCCATCTACATCACTTTCAGTTCAGCGTTGCCCTCCGTTCTTAGCTTATTCATAAGGAGTCACTGTCGTCGTGCCGATCGATTGGCTGCAATGATAATGAATCACTTCCTCTGGCTGCTTCCACTGGTCTTTCCACACCTGAGCTCTCCGGTCATATTGCTAGAGAGGAGTGATGGGAATCTCTTTCACTGGAACCATCTGATGAAAGGAGATAAATTGGTGCTGCACAGATCCAAAAGGGACTGGATGTGGAGGCAGTTCTTCCTGTCGGAGGAATACACAGGAAGTAACTATCAGTACGTCGGCAAGCTTCGCTCAGACAAAGACAGAGGGGATGGAACTGCCAGATACGTTCTCTCTGGGGAAGGAGCAGGCACAATTTTTCGTATCGATGAGAAGTCTGGGGATTTACATGCTACACAGAGACTGGACAGAGAGGAAAAGGCCTCTTACACACTGCAGGCCCAGGCTTTCAACAAGATCACGGGCCTCCCTCTGGAGCCTGCCACTGAATTCATTGTCAAGATACATGACATCAATGACAATGAGCCCAAATTTACCAAGGCTGTCTACACTGCCAGTGTACCTGAAATGTCAGACGTCGGTACGTTTGTAATAGAAGTCAATGCCACTGATGCGGATGATGCCACATATGGGAACAGTGCCAAACTAGTGTACAGTATCCTGCAAGGGCAGCCCTACTTCTCTGTGGAGCCCGAGACAGGAATTGTCAGAATAGCTCTTTCTAATATGGACCGTGAAGTGCGCAAGGAGTATCAGGTGGTTATACAAGCCAAAGACATGGCAGGACAGATGGGTGGTCTGTCAGGAACCACCATGGTCAACGTCACCCTTACAGATGTTAACGACAGCCCGCCACGTTTCGCATACAGTTCTTACCACCTAAGCACTTATGAGTCAGCAGAAATCGGATCAACTGTGGGTCGAATCAAAGCCAACGATGGTGACGAGGGGGAAAACGCCGAAATGAAATACAGAATTGTAGATGGAGATGGCAAAGAATATCTCGATATAATAACAGATGAGATATCCCAGGAGGGTGTTATCGTTGTCAAGAAGAAACTGGACTATGAAAGCAAGCGCGTTTACACAGTGAAAGTGGAGGTGACTAACACACACCAGGACCCCAACTTCACTGATCAGGGCCCTTTCTTAGACACAGCCATCGTGAAAGTCACGGCCAAGGATGTAGATGAGCCTCCTGTCTTCAGCAGACCTCAGTACGTCTTTGAGGTCAATGAGGACACACCTAAAGGAATAGCGATTGGAACCATTACAGCCTGGGACCCTGATGCCACACATTACCCAATCCAATATGCAATAGATCAACACACAGACCCAGAGAGACTCTACCACATCGACCCCAAGAACGGATCCATCACAATTCTTAAGTCTCTTGACAGGGAAGTGTCAAAGTGGCACAACATCTCAGTCCTGGCCAGTGAAATAAATAACCCTCATCAAAGAAGCCGCGTCCCTGTCTTGATAAAGGTTTTGGATGTGAATGACAATGCGCCGGAATTTGCCATGATTTATGAGACatttgtgtgtgagaatgtcAAAGCCGGGCAGCTCATACAGACTATCAGTGCCATCGACACAGACGATCCTCTTGTGGGTCACAAATTTGTATTCAGCTTGAGTTCAATGAATCCAAACTTCACCATCTTTGATAATGAAGATAACACAGCCAGAATCCTGACCAGAAGAAGTGGATTTAACAGGCGTGAAATGAGTGTCTACTATCTGCCAGTAGTTATCTCCGACAGCGACTACCCCATCCAGAGCAGCACCAGCACGTTGACCATTCGCGTGTGCAGTTGTGACGCCACTGGCAACATGCGTTCCTGCAGCGTCGACGCATTGCTGCTCTCTGCTGGCCTCAGCACCGGGGCGCTAGTGGCGATACTTCTCTGTATCCTCATCCTGCTTATGATTGTGGTGCTGTTCTCGGCTCTAAAGAAGCAGAGGAGGAAGGAACCGCTGATCATCTCCAAAGAGGACGTCAGGGATAACGTAGTCAGCTACAACGACGAGGGCGGAGGCGAGGAGGACACGCAGGCCTTCGACATCGGCACGCTGCGCCACCCGGAGGTGATCGAAAGCAACAAACTGCGCCGAGACATCATCCCCGAGATGCTGTTTCCCTATCACAGACCCTCACCCATGAAGGAGTGCGCCGATGTCAGAGACTTCATTATTAGCAGACTACAAGAAAATGACACAGACCCTTTCGCGCCTCCCTATGACTCTCTCGCCACTTACGCTTATGAGGGCAATGGATCAATCGCTGAGTCACTGAGCTCTCTGGAGTCCTCTGTGACTGAGGGAGACCATGAATATGATTACCTCTCTAACTGGGGCCCGCAGTTTAAAAAGCTCGCTGACATGTACATCGGGAAGGATACGGGAGTTGCCAACTAGGCTGCCGTTCAATGACATTCATATTCTCTGTATGTACGCTCGGATCTCACTCTGCGCTCTGAGGCATAacttgaaagaaaaaaggataCTTCACAAGTCCTCTTTCCTTGTTTTTTATCAACACAAGCTGAATTTCACTTTTATGATGGATTTTTTGTGGACGGTGTTGTGGTAAGGTGATTTTGTGTTAATAGGAGAAGTGATggtgatttagttttttttttgtttgtttgtttgtttattaagaaaaaaaaaacacttgaatgAGGAGCAAAATGAATGGAGGATTTTATGACTTTAAATACATGGACAGTGACAAGACTGTCTTTGTCTTGTAACTGATTGTAAAGGACTCTTCCCTGTTCCTCTTCCTTGATGGTGGCCTATCCTACATCACAAATCACATCGTGCTacaattattctttttatttatttttttgttctgaataGTGCccacctacaaaaaaaaaatctccaacTTTCCTACTTTTTCGTAAcacattatcattattgttaatatttatttatttatttgtttgtttatttttaatttagttacaGGGAATGTTAACTGAAGCCTTTAATCctcaaaaaatatgcaaaacgtAAAAATATAAGCCGTCTATTGAATTTGTGAAACTATATTTCATGTCTTTCAAAATCATTTGATGCTTTGTGTGAACATAAATTTGAGTCCATCTTTAagaatttgaatatattttgccTAATTCACTTCACAAAATTggtttgaatgattcattcacaaattagATATATCTGGTTCTCAAAATCTATTCACTGGCGGGTCTCCTGGTCTAAAGTCTAAAGGCAATGGcccagtttttatatttatatattttataaaatttttagaaaatgtagtAGAAAATGCGCCTCTGGGTGCGTCCAGACTTTGCTTATTACAAGACAGGGATGCGCAGCAGGACACATGCCagatattaaaaactaaaagattacagtgtaaaagaatattattgCGTAGACTACATATATAAAAGCTGTAATGATGGACAGTCATTGCTTGCATCAGAATTAGCTTCAGTGATGCGTTTACCTTTTTCCGTCAACTAACTGGCGCAAACTCAACTCAATCTTAAAGGGAATGGGAGATGAGACTCTGATTGGTTGCACGTTACGCCCAAAACACACCAATTATTATTAAGAGAAAAGGGACAACACATTTCGACTATGCGCCCCGGCACACGGACAGTTTTCCATTTTCACCATGTGCTTTAGACTTTGCGTTTAGACTGTTAAAATAGGACCCTTAGTGCGTATGTCACACAAAGCTAACGTTTGACTTCAGAAGTCTTATAATATCGCAAACAAGTAATGTATGCAttcttttatggtgcttttgctACATTTTTTGAATCTTGAAAGCTTCAATTCACATTCATGGTAACTAGAAGAGAGCAATTAGGAAAGTCTTTGGAAAACATGCTCCACAAAAAAGTAGGTTGAGTAAAGAatcagaatgttcatttttggcttTACTGTTTCTTTAACAGGACAAAGAGGGATTTTCAGTTATATTGTCTACATCTAAATCTGAGTGGAGAAATGTTTCATCACAGACTCGGCCTCTCTACACATCTTGTGAAGTGCTCCCTTGTTGAAACATAATTGCAGCATTATCATTACAGCACTGAAAGCTTACAGAGGAACAGGGGAGTATTTCTACATCTGTATGAGATGTAGTCCAATTCAACTTCATTTGCTTGCGTGAAGTTTGCTTAATTTGCAAAACTGCAGGTTACACTGAAATCAAACAGGAATGCTGCAGTACACTGagcttgtgtgaatgaatgttGTCAAAGtgttttatattcacattttttaagtatatattttaataaaaaaaatgaatgca

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06802 CDH10; cadherin 10, type 2, T2-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253165.1 lncRNA upstream 314084 12809072 ~ 12813327 (+) True LOC122362827
TU17212 lncRNA upstream 367520 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA upstream 367520 12745812 ~ 12759891 (+) False G11622
TU17208 lncRNA upstream 430117 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 502459 12623829 ~ 12624952 (+) False LOC122358236
TU17386 lncRNA downstream 168430 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA downstream 168430 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA downstream 168430 13315229 ~ 13466961 (+) True G11740
XR_006253121.1 lncRNA downstream 221794 13368593 ~ 13410609 (+) True LOC122362453
TU17383 lncRNA downstream 317715 13464514 ~ 13466961 (+) False G11740
XM_043256894.1 mRNA upstream 222470 12903132 ~ 12904941 (+) True mc4r
XM_043253375.1 mRNA upstream 253403 12867929 ~ 12874008 (+) True rnf152
XM_043261339.1 mRNA upstream 260355 12863865 ~ 12867056 (+) True buc
XM_043264411.1 mRNA upstream 337304 12785128 ~ 12790107 (+) False tmem68
XM_043254324.1 mRNA downstream 27344 13174143 ~ 13213126 (+) True cdh12a
XM_043263883.1 mRNA downstream 112944 13259743 ~ 13298145 (+) True cdh18a
XM_043222213.1 mRNA downstream 264497 13411296 ~ 13423163 (+) True LOC122326989
XM_043253272.1 mRNA downstream 688419 13835218 ~ 13892685 (+) True dlgap1a
XM_043219234.1 mRNA downstream 756111 13902910 ~ 13904250 (+) True ptf1a
TU17265 other upstream 254266 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 254326 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 501024 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 845907 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 846752 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 1028565 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1028565 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1629523 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1629523 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 3120244 16267043 ~ 16268797 (+) True G12531

Expression Profile