RNA id: XM_043253839.1


Basic Information

Item Value
RNA id XM_043253839.1
length 1624
RNA type mRNA
GC content 0.39
exon number 6
gene id ube2wa
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14146033 ~ 14149244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACACGTACCCCGGGGTTCGTCCAGTGTCCCCGCCGGTGCTAATCTGAACCCGGGGCGGTCGGCTGTTTCCTCTGTACGCacatttgtttactttgtaAGCTAACGTTCAGTCAGTCTGACGAGCCAGTAAACTCTGTGCTGTCACACCGCACACTGCTGTGGAGGTGGAAGAAGACACTTCCGAAGAGATGTGAAACGGGAATTATGCATCGGAGTCCTTCCGAACCCaAGCGATTACAAAAGGAATTGTTGGCATTGCAGAGCGACCCACCTCCGGGAATGACACTTAACGAGAGAAGTGTGCAGAACACGATCACTGAGTGGTTTATAGATATGGAAGGTGCTCCAGGTACTCTCTACGAAGGAGAGAAGTTTCAGCTCCTCTTCAAATTCAGTAGTCGATATCCTTTTGATTCACCTCAGGTAATGTTCACTGGAGAGAACATACCCGTCCATCCACATGTCTATAGCAACGGTCACATCTGTTTATCTATTTTAACGGAGGACTGGTCACCAGCTCTGTCTGTGCAATCTGTGTGTTTAAGCATTATTAGCATGCTCTCAAGCTGCAAAGAAAAGCGACGTCCTCCAGATAACTCCTTTTAtgttaaaacatgtaataaGAATCCAAAGAAAACCAAGTGGTGGTATCATGATGATACGTGCTAGTATCCAGatcattttgatatataaacagACTTTTCCAAGTACGTCAAGTACTTTATGATGCAGTCTTTGTGTTAAGACTGAACCAGCAGACCCTGGGATGGTGATTTATGTATGGATTAGGCGTACGCTTCTGCTGACTGgaaaaaagtgcttaaaaacGGCAGGAATGTAACCCACCCGGCAAGTATGTTCTGATGGAAGCAAGATGTggagctttttttcttttttttttttttgtatgtttgatttatgttgtattgttttctttcataagCCTCTATAGGTTTGCACCGATTGTGCAATAATAACTTCAATGTGGGTTTGGAATAAAAGGAAAGTCAGTGCAAATCAGAAAACCAGCTACTGTAATGGATCAATCATTAAAAGCAGAGACAGAAGTCTATCCTTGCTTGGTTATGCACTGTGAGATTCGAACAGGGCACATCTTTAcgtgtattttatgtaatatcttagctgtatattttaaaccatagtttcttttaaaatgtaagccaTTTTACGTTTAATATTGTAGCTGGGTGTGGTGTTTAGTACTATTCtgataaatgtcatatttacagATATGTACAAAATTAATGCAGGGTGTTGATCATATGACTTGATCTTAAAGGGTATCTGGAATTACACATGCTTTATGGGTTAGGATTTAAGCACTGCTTTTATAGATAGACCCCCATTTTGTGTAGTTAAAACAAGAGGTAACTTTACACATAATCACTTTATCTTTTATGTAAAGCTCTATctagtaatattaaaattgtcTGTTTGATTTCTTAATTTATCCTACTGCGCTGGGAAAGGTTCTTTTAAAAAGACGGCTTTTCCATGTCGTTAGCGTTAGAAGAAGTAAAGTTTGTCttcattgttttgttaaaactttatttaactttatttaaaagaaatgttcttattaaagtaatatattttgaaa

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17696 lncRNA downstream 4176 14139482 ~ 14141857 (-) True G11940
TU17716 lncRNA downstream 41050 14101518 ~ 14104983 (-) True G11958
XR_006252496.1 lncRNA downstream 115768 14016345 ~ 14030265 (-) True LOC122357571
TU17484 lncRNA downstream 353156 13748940 ~ 13792877 (-) True G11794
TU17480 lncRNA downstream 444722 13694319 ~ 13701311 (-) True G11792
TU17726 lncRNA upstream 40138 14189196 ~ 14189598 (-) True G11966
XR_006252500.1 lncRNA upstream 41418 14190476 ~ 14191109 (-) True LOC122357595
TU17729 lncRNA upstream 44517 14193575 ~ 14193812 (-) True G11969
TU17756 lncRNA upstream 99945 14249003 ~ 14250540 (-) True G11982
TU17808 lncRNA upstream 279853 14428911 ~ 14430054 (-) True G12024
XM_043216924.1 mRNA downstream 6710 14136231 ~ 14139323 (-) True rpl7
XM_043219783.1 mRNA downstream 32298 14105263 ~ 14113735 (-) True trpa1a
XM_043256432.1 mRNA downstream 62569 14077992 ~ 14083464 (-) True shhb
XM_043224065.1 mRNA downstream 94400 14042928 ~ 14051633 (-) True cnpy1
XM_043220931.1 mRNA downstream 138136 13994788 ~ 14007897 (-) True paxip1
XM_043255130.1 mRNA upstream 1112 14150170 ~ 14151983 (-) True elocb
XM_043255082.1 mRNA upstream 9276 14158334 ~ 14179577 (-) True jph1b
XM_043255074.1 mRNA upstream 13803 14162861 ~ 14179577 (-) False jph1b
XM_043255066.1 mRNA upstream 13803 14162861 ~ 14179577 (-) False jph1b
XM_043255056.1 mRNA upstream 13803 14162861 ~ 14179577 (-) False jph1b
XR_006247862.1 other downstream 7884 14138060 ~ 14138149 (-) True LOC122328947
TU17473 other downstream 581704 13560329 ~ 13564329 (-) False LOC122328470
TU17474 other downstream 582731 13560329 ~ 13563302 (-) False LOC122328470
TU17472 other downstream 585768 13559222 ~ 13560265 (-) False LOC122328470
TU17470 other downstream 591414 13553852 ~ 13554619 (-) False LOC122328470
TU17840 other upstream 429937 14578995 ~ 14610266 (-) True adcyap1b
unassigned_transcript_207 other upstream 724018 14873076 ~ 14874382 (-) True LOC122360578
XR_006247132.1 other upstream 973467 15122525 ~ 15127491 (-) False faim2a
XR_006247859.1 other upstream 981541 15130599 ~ 15130715 (-) True LOC122328941
TU18236 other upstream 998146 15147204 ~ 15151772 (-) False smarcd3a

Expression Profile