RNA id: XM_043253919.1


Basic Information

Item Value
RNA id XM_043253919.1
length 1101
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122355504
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16497709 ~ 16499702 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAGAATCTTTCTAGAAGGACGCTTCATGCATATCGGCGGATAAGAAGCGCCTCATTGAAAGCAAAGTTCGTTTTCATCACGTCAACTAAAAACTGCAGAAGGTTGTTTACCGAGGTTTCTTTAAGGCAGCGATGGACATCAATGAACTGATCGCCGGTCTTGAGAGTGATCTTAAAGAGATCGCGAGTCTGCTGGAGAAGTGTGAGCGCCAGCGCGTGCGGGACGTGTTAACGCGAGAGCAGAAGGAGATCGAGAAAGAGCTGGCACAGAAGCGACAGCAGAAACTGCAGCAAGCCAAGAAAGACTCTGCGGACAAAACTGACACACTCAAAGGATACGCagtcaaaattaataattacgGATGGGACCAGTCTGACAAATTCGTCAAAATCTACATCACACTAAAAGGTGTACATACTATTCCAGCTGAAAATGTTGAGACCAGCTTTACAGAGAGAAGCTTCAATCTTCTAGTCAAAGATCTGGATGGGAAGAACCATCAAATGGCAATCAACAACCTTTTATATCCTATTATTGTAGCAGAGAGTAGTAGAAAGATAAAAACAGACATGGTCCTCGTTATGTGCAAGAAGCAGTCAACAAAAAAGTGGGACTGTTTGACACAAGTAGAAAAACAGTCTAAGGAGAAAGACCAACCCAACATGAATGAGAACACTGATCCATGTAAGGGCCTGATGAATGTGCTGAAGAAGATCTACACCGATGGAGATGATGAGATGAAACGCACTATCAACAAGGCTTGGGTTGAGTCTCAGGAGAACAAGGCCAAAGCAGATGACTTTGACTTGTAAACCAGCTAACTGGCGTGCTTTCAAAGTGAAACACCCAAATTCAGCTGTTGCATACACGCCATTCCgtcagattattttatttatttttgtacttttttcacgtttaaatgcagctgttagtgaacttttgttttttgtaaagtgtttccGATCCCACTCTTAGTTTCACAACGTTCATAATTGTCAGTTGTTCCATATGGTTCCATAAGTTTTCAGTCAGTGATTGCACTTAAGACCATGTACCTTAAATGaggtaaatgaaaataaacaaatacaaaaaagagTTA

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18588 lncRNA upstream 41177 16450153 ~ 16456532 (+) False LOC122323293
TU18524 lncRNA upstream 232789 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 462801 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 463083 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 619305 15878134 ~ 15878404 (+) True G12491
TU18628 lncRNA downstream 191224 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 232035 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 233519 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 235103 16734805 ~ 16776351 (+) False LOC122361622
TU18737 lncRNA downstream 236672 16736374 ~ 16776351 (+) False LOC122361622
XM_043217636.1 mRNA upstream 488 16495941 ~ 16497221 (+) True mrps14
XM_043217026.1 mRNA upstream 42496 16450132 ~ 16455213 (+) False LOC122323293
XM_043217035.1 mRNA upstream 42496 16450366 ~ 16455213 (+) True LOC122323293
XM_043223811.1 mRNA upstream 54348 16325150 ~ 16443361 (+) True tnr
XM_043220484.1 mRNA upstream 212151 16275070 ~ 16285558 (+) True cop1
XM_043263630.1 mRNA downstream 1350 16501052 ~ 16507898 (+) True plk3
XM_043220290.1 mRNA downstream 45634 16545336 ~ 16547012 (+) True ankrd45
XM_043259164.1 mRNA downstream 61682 16561384 ~ 16612466 (+) True rasal2
XM_043259179.1 mRNA downstream 61682 16561384 ~ 16612466 (+) False rasal2
XM_043259172.1 mRNA downstream 61682 16561384 ~ 16612466 (+) False rasal2
TU18526 other upstream 228912 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1714732 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1715005 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2318094 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 532617 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 862543 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1067139 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1107550 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1279637 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile