RNA id: XM_043254130.1


Basic Information

Item Value
RNA id XM_043254130.1
length 4175
RNA type mRNA
GC content 0.49
exon number 8
gene id plppr3a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12156094 ~ 12168917 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATATGGCCTATTTATGGAAAGATATTTacaaatatctttatggaacatgatattTACGTAATATCCTAAccaaaaaaaatggcataatagaaaaatgtataattttgaacCATACAATACAGTGTTGGACATTGCTGCAAAAATACATGTGTTTTCTGGCATTTATCAAGCTGAAACAGCATTTACACACAGTTCtcctgtatatatttattggcTGAATGCATTGCCTATAATTCGATTTTGCATTTTGCCATTTTCATAATACGAGATATGAGTAGGCTATGTTCTGTCATGTTTTAATTCTGTATGCTGTATCTTCCTTATAAAGCTAAACAAAATATCACGAATGCTGCAGAAAACGCAAAACAACCCCAGACCAGGATCCCTCGCGGTCACCCTATGGTTCTAGGACGAAGCGAGGTTCACTCGAGCGAAGAGCGGCGAGGAGcgagcgtgcgtgcgtgcgtgcgtgcgtccGCGATGACGCGCTGACATGTTCTCACCGGAGGCGTGCTGCGCCATGTGCTGCTGTCCgctcctgacgggaaacatacCTAGACACAAAGGAGCGCGTGGTCCTCAGGCTGCCCCACCCCAGACAAATAAGCAAAGAGCATGAGCGCGCTTATGTGGGTCCACATGAGACGTGTGCTCCGTTAAGAACGTCTCGGCGTCTAAAAGTACGGATAACGTCCGGCGTGATTGAGCGGTCGACGCGCACGCACAAAGAGACGCGCGAATTAACCCTTGCGGTCGTGAACGGGACTCCCTCGCAATCTGTCGCGTCTCTACGTCTCTTTTGTTACACGTTACGGGCTGACGGCTGGAAATAAGCGGGGGTTAAGACGCTCTCCGCGTGTTTGTGTTAAAAAGTGGACCGCCTCCTCCCTCATTTCTGTCCCCTCCCTCAAGAAACCCCCTTCCAGTAGCCTTTTGTGTTCACGGTGCCCTACACAGTCACTGCATTCCCGTTTCGTTTACTATCCGCTCATCCGAGGGCTCCGCGCTCGAGATCTCCGCGAGAAAGTGGCCCGATCGCGAGGAAATTACTCCCATCTACTTCTGGGACTTCGCGACGTTGAGGAAATACGAGCGGAGCCTCCAGCCCCATTCATACTTTTATCCGTTCACTCACCGTCAGCGGACAGGGGGAAGtgaacacaaagatattttgtacaagCGTGAAATGGATTAAGTCGCATTGAGGAAAGCTGGAGCACCACAGACGAACCAAGCGACGGCGAAGGGGTCGGAGGGAGTCGATGAATTTCCAACATCAACGAGAAAGAGATTTTACTCGGCCAAATGCCAAAATGATGTCTCCAAAAGACAAGCCCAAGAAGAAGCCTCCCAAAGACAGCATGACCCTGCTGCCATGTTTCTACTTTGTAGAGCTGCCAATTGTGGCATCCTCCATGATCTCTCTTTACTTCTTGGAGCTGACAGACATATTACAGCCAGCCAAAGTTGGGTTCCGTTGCCATGACCGCACACTGAGCATGCCCTATGTGGAAACAGGAGACGAGCTCATCCCTCTGCTCATGCTGCTCAGCCTGGCCTTCGCTGGCCCGGCAGCGTCTATCATGCTGGGTGAAGCCTTGATGTACTGCATGCAGTCCAAACTGAAGATTCGCTCTGGGACAGAAGGGAGTATAAATGCAGGAGGCTGCAACTTCAACTCCTTCTTACGCAGAACAGTGCGCTTTGTGGGTGTTCATGTGTTTGGGCTGTGCGCCACTGCATTGGTGACTGACGTTATCCAGCTGGCCACTGGCTATCACGCTCCCTTCTTCCTGACTGTGTGCAAACCCAACTACACACTGCCGGGTGTGGCCTGCGATAAAAACCCCTACATAACCCAGGACATCTGCTCAGGCCGGGACCAGTATGCCATCCTGTCAGCAAGGAAAACTTTCCCCTCCCAACACGCCACTCTGTCTGGCTTTGCAGCTGTCTACATCTCGATGTACTTCAATGCCACCATATCAGACCGTACTAAGCTACTGAAGCCCGTGCTGGTGTTTGCGTTTGCCATAGCAGCAGCCCTGGCGAGCTTGACCCAAATCACCCAGTATCGGAGCCACCCGATTGACGTCTACGTGGGATTTGTGATAGGGGCTGGCATCGCTGTTTATCTTGCACTATATGCAGTGGGGAACTTTAGGTCCAATGAAGAGTCCTACCACAGGCCTCTGAAGCAGCCCCCTCCTCCACAAAAAGATCCTCTAAGAGAACTGACACAGCGTGGACATGATTCAGTGTACCAAAAGGCCCATGCTTCTGAGAGCAACGATGAGCTGTCTGCCCCGCCACATGTTGCTGGCCTGAACCGCAAGGTGCGTCGTGAGAAGGCCTCAATGGGCAGTCTGAAGAGGGCTAGTGCAGATGTTGAGCTCCTGGCTCCTCGCAGCCCAATGGGGAAGGAGACCATGGTGACCTTCAGTAACACACTGCCCCGTGCTAACACCAATGCTATGGAAGAGCCTGCTCAGCGTCACATGACCTTCCATGTGCCAATGGACTCTCAGCGTTCCAAACAGCTGGTGTCCGAATGGAAGCAGAAATCAATGGAGATGCGCAGTCTCAGCTTGagggatgaggaagaggaggaaggaaCAACTGCAGAGGGAGTTGAAGGAATTGAAGGAGAAGCTCCAGAGGATCTGGGCATGCCGTCCTCTCTTTATCCTACCGTGCAAGCCAATAGGGGAGCGACGGCGACAGCAGGAGCTAGGGCGATGATGCCTCAGAGGCCCGGTGCCCCGCAGTTGGTTCATATCCCAGAGGAAGCCACAAGACCACCACCAGTGTCACCTAAAAGCGCCATCACACGGGCAAAATGGTTGTCCATGACGGAGAAAGGAGGTCCAGTGCCAGCCGCCACACCAGAACCTCCACGACTACCCAACCAGCCGCGGGTTATGCAGGTGATTGCAATGTCTAAGCAACATGGTCCAGGTAGCATCTCCACACCAAAGTCCTCAGAGACCGCCTCATCCTGTGCCACCTCCAGCACTGGCTCAGAGTCTCCATACTACCGCATCCCATCGGAGCAAGACAGGAGCAGCATTGTCACAGTAGATGCTCACGCTCCTCATCACCCAGTGGTTCGTCTTTCTTCAGGTAACGGAAACACGTGGGATTGGAGGAGCACCTCCAATGGCAGCACTGAAGTCCATGAGACAAGCCGGACGCTCCCTAGACAGGAATGTGTCCGTGATTATCGTCCCCTGAAAACAGACTCCCTCTGCTCTTCTATAAGTGATCCTGATCCTGGGATCCTTCCTCCACCACCTCATCCTGACCTGCTTCTTGACAGCAGTCTAAGTCGAGATTCCTCGCTTCATCGTAACTCCTCAATCTCAGCTAAAGACTGGGAGCCTGGGCAGCCTCACCCTGAGCCGGACCACTTCTTTAAGAACTTGCAAACAAACAGGCCATTTAAAGACTAAAGATGTTACTGTAGGCCAAAGCAGAGACGCAGCAGACTTCTTTTGGGTGGAACCCAATGTGAATAATTGTGTTTTCGGTGGATGGCGAGAGAAGACAGCCTTTTTGGTTATCTCACATGGAGCATCTGGGGTGGATTAGTGCGGTGGAGCACCAGAAGGATCACACAGACTTGAGGAGGCTGCTGAGTATACATGCTCAATCTGTGAGGAATGATGACCCACAAAcctcaaaaaatgaaatacaaaatcaaGTTGTAATTAATGCATTACGTCTTTCTGTTCTTTCCAGAAAACTTTGCCACTTTCAAGAAGCTACGTTTTTATGAGTAAAGACATAACAACCAACCATATTTACATTTgaggtttacattttaattcatacaCAAAGACTTATGTTGTGTTGTACAAGAAGTTATGTTTTAGTTCTTTATTGATTCAGACTCATTTGGGGACAGTTTTATCCTGGGAATATGGACAGGTAAGCAGTCCCATGACTTTGCTGTGTATGGAATCAGTTTTAAGTAGGCCTAGTCACGTTCTCCTTTTTATACTAAAATATGAAGTACTCTTGCTTGTTTGTACgtgttgcatgtgtgtttatttatgtcttCTTGACTTTGGATGGACTGTTATATATCAGCAGGGATGGTCTCTTTCATTTTGCTGCCCTAATGTTaaggtttttgtaacaaactttgaaaaataaaattgtaataatacta

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 54968 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 537231 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 542528 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 545007 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 654508 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 168750 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 376436 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 445458 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 447078 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 454912 12623829 ~ 12624952 (+) False LOC122358236
XM_043256052.1 mRNA upstream 5925 12111956 ~ 12150169 (+) True grin3ba
XM_043218259.1 mRNA upstream 66168 12068261 ~ 12089926 (+) True slc7a14a
XM_043218268.1 mRNA upstream 66168 12068261 ~ 12089926 (+) False slc7a14a
XM_043218277.1 mRNA upstream 66168 12068261 ~ 12089926 (+) False slc7a14a
XM_043218285.1 mRNA upstream 66168 12068261 ~ 12089926 (+) False slc7a14a
XM_043223854.1 mRNA downstream 7311 12176228 ~ 12189936 (+) True palm1b
XM_043223860.1 mRNA downstream 7312 12176229 ~ 12189936 (+) False palm1b
XM_043223867.1 mRNA downstream 13379 12182296 ~ 12189936 (+) False palm1b
XM_043219545.1 mRNA downstream 22312 12191229 ~ 12201145 (+) True ptbp1a
XM_043255426.1 mRNA downstream 35488 12204405 ~ 12256887 (+) True efna2a
XR_006252734.1 other upstream 218504 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 650364 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 656016 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 657157 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 814983 11339863 ~ 11341111 (+) False mrpl34
XR_006247874.1 other downstream 110994 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 111673 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 112455 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 454906 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 699066 12867983 ~ 12873145 (+) False rnf152

Expression Profile