RNA id: XM_043254267.1


Basic Information

Item Value
RNA id XM_043254267.1
length 2244
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122355713
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21702091 ~ 21704894 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAAAGGAACTTTATTGTGTCAAAATTGTTCgattataatgaaaatgacGCTACAAGTGAGGAACAGTCTTACAGACACACCCCTTCTGTAAAGTACGGCCTCCTCCGTGCTGTATAAATAATCATCCAAAAGATTTGAAGGATGCAGAGGCTCTTCTACTGAGGACCTTCAATCTGAGATTTTGCCATGGGTGCCACGAGACTCTGCTTCCTGCTCTTCTGCCTCTTCCTGGTGAGCGTCTCTTCTTTGAGAAAACTTAAAGATATTCATGacttaaaaaacattacatatgcCAGGTCTGCGCCACGTCATGGACTCCAATTATTGTTCTGGTTTGCCCAAAAAGTTGTGACCGTTGATCAGAGCAACATTCTCATCCTCGATTCCAATTTCGATCCTAGTAGAGGTGACTTTGGATTCCACCATTACAGCAACAGAGAAGTCATTCTCCCCTCATTGAGCTCCTGGCAGAGTTACTATTCGGTTGGCAATTTAAAATCTCCTGGAGCCAAAGCACTGCCAGCCTATGTGCAGAAGTATTACAGAAACACCAATGTGCCGGAAAGAAACATGGACAGGCTCATTATctctgtgaaacaaaacaagccAAACAAGATACTCGGCGTGTTTATAACGGCGTACGACCTTCACAAGAACGACTTTAATTATGAGAACACTTATGAGATCGATCCTGCTCTGCTCTTGCAAATTGGGGACCCTTATAACTGCACTGTTGATGAGAGCAACATACCACGTAATACAGAAGACACAGAATATGACAGATGCCTTGAGTTTCTGAAAGAGATGGGATACAGCAGCGATGACTGCAAACACAGTCATATCAGCCGCAGAAAGAAACGCTCGCCCTATttgcaatgcaatgcatatGAAGGAGTTAAACTAGAGATAAAAGCAACTACAGGAGGTTTCGCGAAACTCCTGTGGGAGATGCCTGCTAAAATTATGGAAAATTCCAAATATGTATACATCGAAATCTGCCAAAACACTCGTTCCAGTGAAACTAATGAAGTTCATACGGAGGTCAGGAAACAGCTGAATATTTACGAACCGTCTGGGGTTATAGATACTTCTGTTTCCACGAATGATGGTCTCCAACCTCGACTGCGACTGTACCCATCGCTTTTTGATTTTCAGTTTACTAATCCATATATTTGGTATGGGCCAGAGTTTGACGGAGCTAATAAAGTGATCCCCGCTAGAATAAAGGGGTTTGATGCTAGTCTGCAGCTCTGCGCTGAAGACGGAAAAGCCAGCGCTCGACTCTACATCAAGAAAACCTTCAGCGACtggaaaaatgttcttttctacTCATGGGTGGGCTTCTATAAAAATTCACAAGACAAAAACGATGACTATTCAACGTATCAGTATGCTGATAGGTTTGCTAAGGTCGAAAACTCTATCACACACAATTATGATATTTACCAGTATAATACCAGTTTAGCTATTGTTCCTGGAGTTCAAATCCGTTTTCTGTTGgacaaaaaatatgacaaagtTTTAGCACAAACTACGCCCTGGGAGGGTGTTGAAGCAGTGACAATATTACCATCAGATTGTGGCACACCGAGTCCTAGTCTTCAGCCTAAAATCACATCAAACATGCCAGAATTCTTTTATGGACCAGAGTATGATAATATCGGTCTGCAGCTATTCACTGAGGATGGTAATGCTTGTGCTCGACTTTATGTTAAGAAGACCTTCGCAGATTGGAAAGATACTTTCTACTACTCATGGGTGGGATTCTACACTAGTTCACAAGACCAAAATAATGGCTATTACACGTATAGCTATGTTGTGAAGTTTGAAAAGATGGCGGATGGTAATgataattatgatatttatcaATACAAATCCAAACTGGCTATTGCGCCTGGAGTACAGATACGTTTCCTGAAAGACAAAAGTTCTGATAACGTATTAATTAAAACTGAGCCCTGGAAGAACGGTAAATAAATCAGCTTTTGGCAATTCATAAAAGAAAGTGAGGTGATGTAACGATAACAGTAAAAattcatttgaacttttttaacattagtgAGTCTTTACATTCATCAACATCTGTAACAAACTGCTGTCCGCGTGCTGACATGAATAACCATTAACCGACAGTTCTAGCATGCACTGAATTTAATTGTACCGCATAATATGCAATAGCCTTGCTCTGTTTGTTGTATTATCTCACCCACAATCTCTATTAAAATGCATCTGATGAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21083 lncRNA upstream 80994 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 144693 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 331592 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 355990 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 533204 21166088 ~ 21168887 (+) True G13983
TU21152 lncRNA downstream 11877 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 15024 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 106035 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 144313 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 147010 21851904 ~ 21852835 (+) False LOC122327294
XM_043223836.1 mRNA upstream 14520 21682031 ~ 21687571 (+) True LOC122328123
XM_043223839.1 mRNA upstream 14520 21682031 ~ 21687571 (+) False LOC122328123
XM_043223826.1 mRNA upstream 20203 21676444 ~ 21681888 (+) True chrng
XM_043262117.1 mRNA upstream 28491 21652740 ~ 21673600 (+) True prss56
XM_043262118.1 mRNA upstream 64173 21632030 ~ 21637918 (+) True alg3
XM_043224622.1 mRNA downstream 9789 21714683 ~ 21716290 (+) True ccl20a.3
XM_043219111.1 mRNA downstream 49511 21754405 ~ 21793590 (+) True camsap2b
XM_043259016.1 mRNA downstream 89794 21794688 ~ 21809332 (+) False wdr47a
XM_043259036.1 mRNA downstream 90031 21794925 ~ 21809332 (+) True wdr47a
XM_043259027.1 mRNA downstream 90031 21794925 ~ 21809332 (+) False wdr47a
TU21079 other upstream 219773 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 340383 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 340383 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 340383 21337682 ~ 21361708 (+) False G14211
TU20650 other upstream 537269 21164297 ~ 21164822 (+) False G13998
TU21151 other downstream 10461 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 155997 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 223853 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 986357 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1840212 23545106 ~ 23547974 (+) True G14831

Expression Profile