RNA id: XM_043254324.1


Basic Information

Item Value
RNA id XM_043254324.1
length 3752
RNA type mRNA
GC content 0.47
exon number 12
gene id cdh12a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13174143 ~ 13213126 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACTGCAGGGGTGAATACTGAATTCAGCAAGCGCTTTGCTCTCCCCCACATTCTGTTTTCACAGAGCTCTGCACAATGCTCGgatgagagagggagagacagtgtgttagagagagagagggcaagTTAAAAAGAGCCAAAGAGGGAGCGAGAGGGCGAGCGCATTACAGAGAGTGATTGAGGAGAAGACCAGAAAGAGAGCGCGTGTGCGTGAGATCGAAGAGTTTATTGCAATAGCGACTGGAGGTCTGGATTACGCCGCTTTAATCCTCAGGAGACTTTGCGGGACGTTTTGAAAGGTGGTTCGCTAAAATTTCGAGCGCCCCAGGAATTCCATGGATGTTAGTTGTTCTATTCCGCCGAGGCTTTGTGGAGTTCTTCATTATTGGATTTATCGCTCCTTTGCCGTCACCATAAAAGTCACCTGTATCCATCTTTGCACCTAAAGGTTGTTCCAATGCTCATGGGGAACTGTTTGCTGCTGTTCCTCTGGTGCCTCTTAGACAAAAGCTTCGTTTCGCCCCTCCACTCTTCATCCCAGAGCAGGATGGGGAAGGAGCAGCACAGGAACATGATGGCACATAGGAAACACGGCATGATGGGAGTTCACAGAGTCAAGAGAGGATGGGTGTGGAACCAGTTCTTTGTTCTGGAGGAATACATGGGATCTGATCCGCAGTATGTTGGAAAGCTTCACTCTGACCTGGATAAGGGAGATAGTATGGTGAAGTACACACTCTCAGGTGAAGGAGTTGGCTCTATTTTCACGATCGAGCCAAACACCGGAGACATCCATGCCTTAAGGAGCCTGGACCGAGAAGAGAAGCCTTATTACACACTGAGAGCGCAGGCTGTGGACGTGCTCACAGGCAGACCCTTGGAGCCCGAGTCGGAGTTTATTATCAAAGTCCAGGACATCAATGACAATGAGCCAAGGTTCCTGGAGGGCCCATACTCGGCTAGCGTCCCAGAGATGTCACCCGTCGGCACATATGTGACACAAATAACCGCCACTGACGCTGATGACCCTACTTATGGAAACAGCGCACGGATTGTGTACAGCATCCTTCATGGGCAGCCCTATTTCTCTGTTGACCCCAAGACAGGGATCATAAGAGTTGCCTTACCCAACATGGACAGGGAAGTTAAGGAAATGTACCAGGTGGTCATACAGGCTAAGGACATGGGCGGCCAGCTTGGAGGTTTAGCTGGGACCACAACCATCAATATCACTCTTCGTGATGTCAACGACAACCCTCCACGTTTTTCGAAAAGTATCTTTCACCTGCGCGTTCCTGAATCTTCACCTGTGGGCTCGTCGGTGGGGAGGGTCAAAGCTCATGATCTGGATTCTGGGAAGAATGCTGAAGTGGAATATAGCATTGTTCCTGGTGATGGAGGCTCCATGTTTGATATTTACAGCAATAAGAACACTCAAGAGGGAACAGTCATACTGAAAAAGCGTCTGGACTACGAGACCAGAAAGGCCTACACCTTCAAAGTAGAAGCTTCAAACGCAGCTCTCGATCATCGATTCCTACATTTGGGACCTTTTAAGGACACTGCCACAGTGAAAGTGAATGTTCTGGATGTGGAGGAACCTCCTGTCTTCAGCCGGCTGTCTTATAGCATGGAGACATACGAGGACACACCAGTGGGCATCATCGTCGGAGCCGTAACAGCCGAGGACCTAGATGTAGGCAACAGTCCCGTTAGATACTCTGTTGAGTGGAGAAAGGACTCCGAAAACCACTTCGACATTGACCCTGTTGAAGGAACTCTGTCCGTCAGCGAAGCCCTGGACAGAGAGATAAATACAGAACACAACGTCACTGTTGTAGCAACAAAAGTTAACAACCCCCTGCTGTCCAGCAAAGTTACTGTCATAATCAAAGTGCTGGATGTCAATGAATTTCCTCCAGAACTTGCCTTTGCGTATGAGacatttgtttgtgaaaatgCAAAAGTAGGACAGGTGATTCAGATCATCAGCGCCACAGACAGAGACATGCCCGCTGTCGAGCACCGATTCTACTTCAAATCCCCTTCACAGACCAGGAACAGAAACTTCACAATCAGGGACTATGGAAACAACACAGCTGGAGTGGTGACCAGGCGAGGGGGGTTCCGGAGACTGGAGCAGAGCATGTACCTGGTGCCGGTCATTGTGGAGGACGGCGGGTATCCGATCCGAAGCAGCACTGGGACGGTGTCGGTGCGAGTGTGTACCTGCGACACAGACGGCTCCCTCGTTTCCTGCAGTGCGGAAGCTATCTTCTTTCCCATGGGACTCAGCACTGGAGCTTTAATGGCCATTCTGCTGTGCATTGTCATTCTGCTGGTGATGGTGGTGCTCTATATGGGcctgagaaaacaaaagaagaaggACACGCTGATGTCGTCTAAAGAGGACGTCCGGGACAATGTGATCCACTACGACGATGAAGGGGGTGGGGAAGAGGACACCCAAGCCTTTGACATAGGTACGTTACGCAATCCCAAAGGCATCAAAGAGACGGCGCAGCTGCAAAAAATAAGATCAGAGGATGAGCCTGATCGGGCTAGTGCCTGCGTTTCCAACGAGGACAGCGAGGACATCCGAGCCTACATCCATCACTGTCTTCTGGAGAACTCAACACCTCCGTATGACTCCCTGGTCACGTATGCATATGAGGGAGAGGGATCGGTGGCCGAGTCTCTCAGTTCCATTGAGTCCTGGGTGCTTGAACCCAAGGAGGATTACAGAAATCTCTGTGACTGGGGTCCTCGCTTCAAAACACTGGCTGGGATATTTAAAGAGCATGAGTCTAAGGACACGGAAAAGACGGCAAATGAAGCACTAAATGACAGACTGGACTGAGAGCATTTCACACGCTCTTTGAAAAACAcaacgtttatttatttcaggcaTGGCACTTAAGGGAATAGTTTGatccaaaatgaaaatcggcatgtcgttccaaaccggtaaaaacatctttttttggcAATAGTGTAGCAATGTATGAAGCATAGTTCACACAAAAGCCACTTTCAAACCAAATGGCTGCTGGTCAATGTGAAAATCCATGTGAGCAATTTGTAGCTGAAGTCTGTGTTGGGAAATCTTTTGCCCTTAATGTGATCTCATGGATTTCTATAGAAATTAGATTTTGCCTGCAAAAATGTGCTGAATATTAGGTAATATGGCCACaccttaaagggttagttaacCCCAAAGTGGAAATatccctcatgttgttccaaacccataaaacctttgttcatctacagaacataaaatatatatatatttatacaagagctatctgaccctccgtagacaacaacacaactgaaatattcttatattcagaaacgtagtaaatataTCAGTAAAAGCATCCATGTGACAtaagtggctcaacttcagttttgtgattcttctacgagaatacttttttgggggcaaagaaaacaacaataacatcaTTCTTCCGAGTTACATTTTAGAAAGTATCACAGCGCGTATGCACACTTTCCCTTAACCGTGACCAATGCCTGTTGAGTTCCTGCGCATGCTTTCGCCCCAGACGTAACTCAGTATTTAAGCTGCACACCATTATATCAATACCTACTACAAAtgtactctccaaaatggtggaagacgtaactcagaggagaagaatggttgagtaaattgttaTTCATCACagaactgaagttgagccactgatatcacatggactgttttaccaatgtatttttact

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253165.1 lncRNA upstream 360816 12809072 ~ 12813327 (+) True LOC122362827
TU17212 lncRNA upstream 414252 12745812 ~ 12759891 (+) True G11622
TU17214 lncRNA upstream 414252 12745812 ~ 12759891 (+) False G11622
TU17208 lncRNA upstream 476849 12697086 ~ 12697294 (+) True G11618
XR_006252588.1 lncRNA upstream 549191 12623829 ~ 12624952 (+) False LOC122358236
TU17386 lncRNA downstream 102103 13315229 ~ 13466961 (+) False G11740
TU17389 lncRNA downstream 102103 13315229 ~ 13466961 (+) False G11740
TU17390 lncRNA downstream 102103 13315229 ~ 13466961 (+) True G11740
XR_006253121.1 lncRNA downstream 155467 13368593 ~ 13410609 (+) True LOC122362453
TU17383 lncRNA downstream 251388 13464514 ~ 13466961 (+) False G11740
XM_043253826.1 mRNA upstream 27344 13127411 ~ 13146799 (+) True cdh10a
XM_043256894.1 mRNA upstream 269202 12903132 ~ 12904941 (+) True mc4r
XM_043253375.1 mRNA upstream 300135 12867929 ~ 12874008 (+) True rnf152
XM_043261339.1 mRNA upstream 307087 12863865 ~ 12867056 (+) True buc
XM_043264420.1 mRNA upstream 384036 12785150 ~ 12790107 (+) True tmem68
XM_043263883.1 mRNA downstream 46617 13259743 ~ 13298145 (+) True cdh18a
XM_043222213.1 mRNA downstream 198170 13411296 ~ 13423163 (+) True LOC122326989
XM_043253272.1 mRNA downstream 622092 13835218 ~ 13892685 (+) True dlgap1a
XM_043219234.1 mRNA downstream 689784 13902910 ~ 13904250 (+) True ptf1a
XM_043216932.1 mRNA downstream 726144 13939270 ~ 13990501 (+) True si:ch211-207d6.2
TU17265 other upstream 300998 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 301058 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 547756 12623823 ~ 12626387 (+) True LOC122358236
XR_006247863.1 other upstream 892639 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 893484 12280590 ~ 12280659 (+) True LOC122328989
TU17566 other downstream 962238 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 962238 14175364 ~ 14179615 (+) False G11854
XR_006252462.1 other downstream 1563196 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 1563196 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 3053917 16267043 ~ 16268797 (+) True G12531

Expression Profile