RNA id: XM_043254496.1


Basic Information

Item Value
RNA id XM_043254496.1
length 1688
RNA type mRNA
GC content 0.44
exon number 14
gene id zgc:152670
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21391118 ~ 21397540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTAGATAGTCTTTGTTTTGATGTATTGATGGTCTGATAATGGCTGTAAAGGAACTGGCTATACTTGTGGTGTTTTCTTTGACTGTCTGCACTGGGCATGAATTCTTCACTTCAACAGATAAGATTTCACATCTTTTTGAAGAGGAGGGTTTCCTTCTGAGTGCCTTCGCTTCGTACATTGATGCAGAAGAAGacattataaagaaaatgaagagCGTCCTTCTGCTTCTTCaactgcgcacacacacagacccttCGGACCCTTCGGAAATAAAAGACCCCGTGGCAGCTTTCAACCTCCTCATACGGCTGAGATCTGACTGGCTGAGCATCGAAAAATACACTCTGAGGAGTCTTCATGAATACAACGTGTATCAGATACTGCTGGAACATGCACAGATCCCTCAGTTAGAGGATTTAATGGGCGCAGCATCAGGACTGATCAGTCTGCAAGAGCTCTACAAACTCTACCCCAACAACATCACAAAGGAAACGTCTTTAAATGCAGATAATGCTTGCTTTGTTGGGTCGGTCGCTTATAGCGAGGACAAATTCCAGCATGCCTTTCTCTGGTTTCTGTACAGTCTGAACAGATTAACAGAATACTCAACCACTACAGAGGAAGAGCTGCTCCAATACCTTAGTGACTCAGCCTATCATTTTGGTAGCCTGCCTACGGCAATCTACTTCAGCAAATGGCTTTTTGATCTGGACCCAACTAATGATGAAGTCAAAGTTCAGCTGGACCTGTATAGACTCCTTCACAATAAGAGAAAATCAAACCCTGACATATTCACGCTGAACACAGAGTCAAGTAACTCCTATGAGGCACTGTGCAGAGGAGAGATTGATGAGAGGACCTCCAGGAGGCAGAGGGCACTGTCCTGTAGATACAGCACAGGTGGAGGAAACCCCAGACTGATGTATGCACCagtgaaagaggaagaggagtgGGACGAGCCTCGAATCATCAGATTTCATGACATTATTTCAGACCAAGAGATAGAGATCCTGAAGAACATCTCCAGACCTCTACTTTCTAGATCAGAGGTTTTTCAAGATGGAAGGGGTGCTGTCTCAAAAGGCCGTGTTTCTCAAagtgtttttctacaAGATGATGACCCTGTGGATGCTCTTGTCAATCAGAGGATTGCAGATGCCACTGGACTCTCCATGGAAACAGCCGAGTTACTGCATGTTCAGAATTATGGGATAGGTGGCAGATATGAACCACATAACGATGCTTTGAACATACGGAATGACAGGATtgcaacatttctattttatATGAGTGATGTGGAGATAGGGGGCGCCACTGTGTTCCCTGAAGCTGGAGTTGCAGTGCAGCCAAAAAAGGGCTCAGCCGTGTTTTGGTACAACCTCCACAGAAATGGAAAAGTGGATTCGAATGCAAAACATGCTGGATGCCCCGTGTTATGGGGTAACAAATGGGtggctaACAAATGGATCTATGAGTTTGGACAAGAGTTCAAGAGACCCTGTTCTTTGTCAGAATGGGAGTAAAGGACCGTACAGAGCCTGAAATCATACAGAAAGCATAGGATATTTGTTTCTGGGCATTCCTGAAATTTAAGATTATTGAAGgtgataaaaaatattaatgctttatagCATTTTAACCCACCAAATACCAGCATTTTGTCACCATGCTTGTGTATCCCATTTTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21010 lncRNA upstream 20619 21365808 ~ 21370499 (+) True G14212
TU21039 lncRNA upstream 45017 21342371 ~ 21346101 (+) True G14234
TU20627 lncRNA upstream 222231 21166088 ~ 21168887 (+) True G13983
TU20644 lncRNA upstream 237336 21152103 ~ 21153782 (+) True G13995
TU20642 lncRNA upstream 239982 21150658 ~ 21151136 (+) True G13994
TU21083 lncRNA downstream 135705 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA downstream 159304 21556844 ~ 21557398 (+) True G14285
TU21152 lncRNA downstream 319231 21716771 ~ 21717992 (+) True G14315
TU21153 lncRNA downstream 322378 21719918 ~ 21720575 (+) True G14316
XR_006252672.1 lncRNA downstream 413389 21810929 ~ 21812903 (+) True LOC122359002
XM_043218333.1 mRNA upstream 145118 21227323 ~ 21246000 (+) False nlrb5
XM_043218330.1 mRNA upstream 145118 21228639 ~ 21246000 (+) True nlrb5
XM_043218349.1 mRNA upstream 145118 21228639 ~ 21246000 (+) False nlrb5
XM_043218341.1 mRNA upstream 145118 21228639 ~ 21246000 (+) False nlrb5
XM_043260565.1 mRNA upstream 186245 21185209 ~ 21204873 (+) True arhgap12a
XM_043219271.1 mRNA downstream 26286 21423826 ~ 21462693 (+) True kcnab1b
XM_043219247.1 mRNA downstream 65258 21462798 ~ 21474564 (+) True pask
XM_043219257.1 mRNA downstream 65259 21462799 ~ 21474564 (+) False pask
XM_043252921.1 mRNA downstream 77071 21474611 ~ 21477524 (+) True mterf4
XM_043252907.1 mRNA downstream 80119 21477659 ~ 21480866 (+) True LOC122354646
TU21005 other upstream 29410 21307407 ~ 21361708 (+) False G14211
TU21007 other upstream 29410 21337682 ~ 21361708 (+) True G14211
TU21008 other upstream 29410 21337682 ~ 21361708 (+) False G14211
TU20649 other upstream 226296 21163942 ~ 21164822 (+) True G13998
TU20650 other upstream 226296 21164297 ~ 21164822 (+) False G13998
TU21079 other downstream 84136 21481676 ~ 21482318 (+) False LOC122354659
TU21151 other downstream 317815 21715355 ~ 21716287 (+) False ccl20a.3
TU21370 other downstream 463351 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 531207 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 1293711 22691251 ~ 22695330 (+) True fcer1gl

Expression Profile