RNA id: XM_043254892.1


Basic Information

Item Value
RNA id XM_043254892.1
length 1675
RNA type mRNA
GC content 0.46
exon number 11
gene id tecrl2b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9173853 ~ 9180307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGGGGTGCTTCATGTGCATGTACATGACAGGCGTATTTCTGCAGACGCAGGTCACAAATGCTCCAAATGAAGTAGAACAGGCCCTGTTTTCCGGAAATAAAAAGTCGCGGCGAGCTTGACGGTGTTTGAAATCTCGAAGCGTGGTAACCTGAGCAAATTTACGTAACTATGTCAACAAATACTCTGGCCGCGATACTCCACTCGATATCCCTGTGAGGTCATCATAAGCATTCCATCTCTTAGCTTGTGGCTCTAAGGGTCTGATCGCATCTGTGCTCCAACCACCAAAACCAGGGCTCACCTACAGCCCTCAGCAGGCATCATGGGATGTGTGGATTTAAGGAGTCTCTTCACCGTAGCCCAGTTCATAAAGGCCAGATGTGACCACGGCCTGAAAGCTGGCGAGAGCAAGAATAAGAATTATGTCTTTTTTGAGGTGGAGATCCTGGACCCCAAGAGCAAGGCGCAACTCTGCTACCTGGATAAGGTGGAGCCCAACGCCACTATCGCAGAGATCAAGACTTTGTTGCACAAAatttACCCCAAGTTTTATCCATCGAGACAGGCCCTGAAGCTACATCCAGAGGGAAAGGCCCTCAGTGACGACGATGTGCTGGAGGATCTACCGGTCGGCACGACCGCAACCATGTTCTTCCAGGACCTCGGCCCACAGTTAGGCTGGACTATGGTGTTTCTGGCAGAGTGTCTCGGGCCGCTTTTCATTTACCTGCTGTTCTACTATCGCCTTCCTTACATCTACGGGCACGAGTTCGACTTCACCCGCAGTCCATTTAAAGTTGTCaaACTGGCTAGCTGGTGCCACTCTCTTCATTACATCAAGAGGCTTGTGGAAACTATTTTCATCCATCGTTTTTCCGACGGAACGTTACCTTTACGCACCATCATGCTGCTCTGTCTGTATTACTGGGGGTTTGCAGCGTGGCAGGCGTATTACATCAACCACCCGCTCTACACCCCAGCAACTTATGGGAGACTTCAAATCTACTGCGCGCTGGCAATGTTTTTGGTCTGTGAGTTTGGCAATTTCTCAGTTCATCTGATTTTGAATCGGATCAGCTGTAACGGTGGGATCATGGATCAGCTTCACGGTCATGACACAGTGTGTTCCAGtgggagtttttgcatttttgggcTTCATTCAGATGACTATATGGGCTCGGGCGAAGCATAAAACCTACATCGAGCAATTCAAAGACTATCCTGACTTGAGAACGGCCATCATTCCACTCTTCTTCTAGATCGATTGGATGGAGGATGAAGCTACATGCACTTTGTCACTGGATGCCTCACCAAAACGACATATCATAAGCAGCAAAACAAGTCTATTGTTTCTCTGTCAGACCTTGTGATTTAATCAGACACAGTTAAGATCGTGATGTACTCTCTGAAGTGTGAGGAGGTAATTACTAGTAATTACGTTAATTATGAAAAGAGGCATAACTGAGGACAGGCTGAGGTTGTACTGCAAGTTTGAGGAAGATATACTAACAGAAACTTTTGCAAAAGGTGTATTATTTTGCAAATTGAAACATTTGCTTGACATCAATGATTGGAAGACCTGACTGTGAAGGCCTTCAGACCACACGGTGTACAGTTTTATTGATGTTGattgttcatttttgtattgcattaaaacattttgcagaACACA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15557 lncRNA upstream 117326 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 118940 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 233999 8939969 ~ 8941186 (+) True G10433
TU15539 lncRNA upstream 245112 8929504 ~ 8930073 (+) True G10431
TU15463 lncRNA upstream 294732 8879942 ~ 8880453 (+) True G10374
TU15580 lncRNA downstream 35198 9215505 ~ 9216664 (+) True G10466
TU15704 lncRNA downstream 274059 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 305870 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA downstream 305870 9486177 ~ 9510133 (+) False G10571
TU15733 lncRNA downstream 396864 9577171 ~ 9577406 (+) True G10581
XM_043256072.1 mRNA upstream 4218 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA upstream 5400 9162611 ~ 9169785 (+) True olfm3b
XM_043224154.1 mRNA upstream 20751 9087694 ~ 9154434 (+) True col11a1b
XM_043217443.1 mRNA upstream 245875 8890773 ~ 8929310 (+) True vav3b
XM_043259130.1 mRNA upstream 297983 8868109 ~ 8877202 (+) False LOC122359011
XM_043221226.1 mRNA downstream 59325 9239632 ~ 9248291 (+) True abcd3b
XM_043223752.1 mRNA downstream 75078 9255385 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223748.1 mRNA downstream 88448 9268755 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223743.1 mRNA downstream 91119 9271426 ~ 9277476 (+) True si:dkey-10f21.4
XM_043219505.1 mRNA downstream 97456 9277763 ~ 9281294 (+) False LOC122324815
XR_006252402.1 other upstream 3270 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1067408 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1592800 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2188066 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2482810 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 566287 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 731321 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 731321 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1530823 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 2059819 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile